Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq159 845 0.0 seq2746 178 5e-42 seq367 98.7 4e-18 seq854 80.6 1e-12 seq529 75.2 4e-11 >seq159 Length=157230 Score = 845 bits (936), Expect = 0.0 Identities = 557/604 (92%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 ||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||| Sbjct 49539 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTTGCCGAGAA 49484 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| ||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 49483 GCGGCT-GACGAAGGATT-GCAGCTCGGAGATCTGCGCTTTCTT-CTTGGCGTTGTCCGA 49427 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 49426 CAGCAACTGCTCGCGGGACTGGGTCGCCACGGTCATGTATTCGTCGTAGTTGCCCGGGAA 49367 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 49366 CAGGCGCAGCTCGCCGTAGTCCAGGTCGGCCATGTGGGTGCAGACGCTGTTCAGGAAGTG 49307 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 49306 ACGGTCGTGAGAGATGATGATCATCAGGCTGTTACGCTGGGTCAGGATGTTTTCCAGCCA 49247 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||| Sbjct 49246 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAACACTTCCGGATC 49187 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 49186 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCTGGTGACACTTCACTCAT 49127 Query 421 CGGACCGAAGTGCTGCTCCA-GCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGG 479 ||| ||| ||||||||| | || || ||||||| |||||||||| ||||||||| |||| Sbjct 49126 CGGGCCGTTGTGCTGCTCGATGCCGA-TACCCAGGCCCAGCAGCAACTCACCGGCGCGGG 49068 Query 480 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGC 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 49067 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAAGTCGGTTTCCAGCTCGGCCACGGCCATGC 49008 Query 540 CGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCC 599 |||| |||||| |||| |||||||||||||| || | || ||||||||||||||||||| Sbjct 49007 CGTCGTCTTCGGTCATCTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCC 48948 Query 600 ACAG 603 |||| Sbjct 48947 ACAG 48944 >seq2746 Length=12210 Score = 178 bits (196), Expect = 5e-42 Identities = 188/248 (76%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 302 CGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCG 361 ||||||||||||||||||| || || |||||||||||||||| ||| | || || | Sbjct 5648 CGGATGGTGTTGATGTCCAGGTTATTCGTCGGTTCGTCGAGCAGCAGGATGTCCGGGTTC 5707 Query 362 GAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCATC 421 || ||||||||||| ||||||| || |||||||||||||| || || || | ||||||| Sbjct 5708 GAGAACAGCGCCTGTGCCAGCAGCACGCGCAGCTTCCAGCCTGGCGAGACATTGCTCATC 5767 Query 422 GGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGGAT 481 ||||| ||| | || | | | ||| |||||||||||| || ||||| || ||| Sbjct 5768 GGACCTTGATGCAGGTCAATGGCGACACCGGCACCCAGCAGCAGTTCGCCGGCGCGCGAT 5827 Query 482 TCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGCCG 541 ||||| |||||||| || ||||| | | | ||||||||||||| | |||| | Sbjct 5828 TCGGCCGTGTAGCCATCGTACTCGGACACTTTGCCTTCCAGCTCGGCCGCCTTCATGTAG 5887 Query 542 TCTTCTTC 549 ||||| || Sbjct 5888 TCTTCGTC 5895 >seq367 Length=135625 Score = 98.7 bits (108), Expect = 4e-18 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 199 GTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGAT 258 |||||| || ||| |||| || | | | ||||||| ||||||||| | |||| Sbjct 87736 GTCCAGTTCGAGGATGCGGGTTGCCAGGTTCTGCAGGAAGGAACGGTCGTGCG---TGAT 87792 Query 259 GATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTG 313 || || || | |||||| | | ||| | ||| |||||| ||| | | | Sbjct 87793 GAACAGCACGGCGCCCTGGAAATCCTTG--AGGGCTTCTTCAAGCCAGGCGATTGCGCCG 87850 Query 314 ATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCC 373 ||||||| ||||||||||||||||||||||| || || || || ||||||| ||| ||| Sbjct 87851 ATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAACAGATCCGGCTCGGAAACCAGGGCC 87910 Query 374 TGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCG 415 |||||||||| || || | |||||| ||||| |||| Sbjct 87911 TGGGCCAGCAGGACGCGGCGACGCCAGCCGCCGGACAATTCG 87952 >seq854 Length=46540 Score = 80.6 bits (88), Expect = 1e-12 Identities = 179/261 (69%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 292 TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCAC 351 |||||||||| ||||| || | ||||| ||||||||||||||| ||||||| ||||| Sbjct 15312 TTCCAGCCAGATGATGGCGTCCAGGTCCAGGTGGTTGGTCGGTTCATCGAGCAGCAGCAG 15371 Query 352 TTCAGGATCGG-AAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCC-CGGGGAC 409 || ||| || | | ||||||||| ||||| | ||||| |||||| | || | Sbjct 15372 GTC-GGACGGGCACATCAGCGCCTGCGCCAGGTTCAGACGCATGCGCCAGCCGCCGGAAA 15430 Query 410 ACTTCGCTCATCGGACCGAAG-TGCTGCTCCAGCGGAATACCCAGACCCAGCAGCA---G 465 | ||||| ||| | | | ||| ||||| | || ||||| |||||||||| | Sbjct 15431 AACTCGCT--ACGGGCTGCTGCATCTGGTCCAGGGTAAAGCCCAGGCCCAGCAGCAATTG 15488 Query 466 CTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTC 525 ||| ||| || || | | ||||| |||| ||||| | | || | | | || Sbjct 15489 CTCGCCG---CGCGACTGCACCGTGTACGCGTCGGCATCGGCCAGCGCGCTGTAGATTTC 15545 Query 526 GGCCACGGCCATGCCGTCTTC 546 | | | ||| ||||||| ||| Sbjct 15546 GCCGATGGCGATGCCGTTTTC 15566 >seq529 Length=33523 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 292 TTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCAC 351 ||||||||| |||||| | ||| ||||| |||||||| ||||||||||||| |||||| Sbjct 27219 TTCCAGCCACAGGATGGAGCTGAAGTCCAGATGGTTGGTTGGTTCGTCGAGCAGCAGCAC 27160 Query 352 TTCAGGATCGGAAAACAGCGCCTGGGCCAGC 382 || || | || | ||||| | |||||| Sbjct 27159 GTCCGGCGCCGAGACGAGCGCGCGCGCCAGC 27129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881328246980