Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1401 792 0.0 seq158 358 2e-96 seq3 349 1e-93 seq1400 325 1e-86 seq2584 111 6e-22 >seq1401 Length=5644 Score = 792 bits (878), Expect = 0.0 Identities = 540/602 (90%), Gaps = 4/602 (1%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| | |||| || ||||||||||||| |||||||||||||| |||||||||| Sbjct 3223 TCGACTACGAACCTTA-TCGCCCGCAGTCTCACTGCCGCGCTCTCACTCACCGGCATTCG 3165 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3164 GAGTTTGGCTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTAGCTCTACCTCC 3105 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3104 GGTGAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGGAG 3045 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 3044 TTTGATTGGCCTTTCACCCCTACCCACAACTCATCCCCTCAGTTTTCAACCTAAGTGGGT 2985 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||||| |||||||| |||||||||||| |||||| ||||||||| ||||| Sbjct 2984 TCGGTCCTCCACGACGTCTTACCGTCGCTTCAACCTGGCCATGGGTAGATCACTCCGCTT 2925 Query 300 CGGGTCTTGATCGTGCCACT-CATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 ||||||| || | ||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 2924 CGGGTCTAGAGCATGCCACTACGATCGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 2865 Query 359 CACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 |||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 2864 CACACGGGTTAACCTCGCGACATGCCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGC 2805 Query 419 CGTCACCTGGTAC-CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAG 477 | ||||| | |||| || | |||| ||||||||||| || || |||||||| Sbjct 2804 CATCACCCCCAGCAGTAAACTGCTCGAAGGCTCTGACGGATTGTAAGCGCACGGTTTCAG 2745 Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 2744 GTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCT 2685 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 ||||||||||| |||||||| ||||||| |||||||||||| ||||||||||| | |||| Sbjct 2684 ATCGGTCACCAGGGAGTATTCAGGCTTATCGGGTGGTCCCGACAGATTCACACCAGATTT 2625 Query 598 CA 599 || Sbjct 2624 CA 2623 >seq158 Length=3153 Score = 358 bits (396), Expect = 2e-96 Identities = 421/555 (76%), Gaps = 22/555 (4%) Strand=Plus/Plus Query 40 GCTCTCACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTA 97 |||| |||| ||| |||||||||||| || ||| |||||| | | ||||||| Sbjct 2208 GCTCGCACTCATCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCAATGACCCCCTA 2266 Query 98 GACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTT 155 | |||| |||||||||||| ||| | || || | | | || |||||||| ||| Sbjct 2267 G-CCATAACAGTGCTCTACCCCCGATGGTGATACTTGAGGCACT--ACCTAAATAGTTTT 2323 Query 156 CGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCC 215 ||| ||||||||||||| | ||||||| || |||||||||||||| |||||| |||||| Sbjct 2324 CGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTACCCACAGCTCATCC 2383 Query 216 CCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCT 275 ||| | |||||||| | ||||||||||| |||||| | || ||||| ||||| ||| Sbjct 2384 CCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGTGTTACCGCACCTTCATCCT 2443 Query 276 GCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGG 335 | ||||| |||||||||| | ||||||||| | | || ||| || |||||||||||| Sbjct 2444 GGCCATGAGTAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAT-CGCCCTATTCGG 2502 Query 336 ACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCA 395 ||||| |||| |||||||| ||| | | ||||||||| || || || | || |||| Sbjct 2503 ACTCGATTTCTCTACGGCTTCCCTA-TCTGGTTAACCTTGCCACTGAATG-TAAGTCGCT 2560 Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 | | |||| | ||||||| |||| ||||| || || ||| || ||||| || Sbjct 2561 GACCCATTATACAAAAGGTACGCAGTCAC--GGAAC----AAG-----TCCGCTCCTACT 2609 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515 | ||||| ||||| ||||||||| |||||||||||||| | ||||| |||||| |||| Sbjct 2610 GTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTTCCGGGGTTCTTTTCGCCTT 2669 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 |||||||||||||| || | ||||||||| | |||||||||| ||| || ||||| Sbjct 2670 TCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTC 2729 Query 576 CCGCCAGATTCACAC 590 || ||| ||||| || Sbjct 2730 CCCCCATATTCAGAC 2744 >seq3 Length=3814 Score = 349 bits (386), Expect = 1e-93 Identities = 418/557 (75%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 1527 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 1468 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 1467 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 1410 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 1409 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 1350 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 1349 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATG 1290 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 1289 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 1231 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| ||||| || || || |||| | | ||| Sbjct 1230 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 1173 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| ||||| | || |||| || ||||| || | ||||| Sbjct 1172 TATACAAAAGGTACGCAGTCAC--AGAAC---AAAG-----TCTGCTCCCACTGCTTGTA 1123 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | ||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 1122 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 1063 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 1062 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 1003 Query 582 GATTCACACGAAATTTC 598 ||||| || || |||| Sbjct 1002 TATTCAGACAAAGTTTC 986 >seq1400 Length=5517 Score = 325 bits (360), Expect = 1e-86 Identities = 406/547 (74%), Gaps = 26/547 (5%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||||| || || |||| | || ||||| ||| |||| |||| Sbjct 3338 GCATTCGGAGTTTGTCTGGATTTGGTAGGATTTGACTCCCCCGCACCCAATCAGTAGCTC 3279 Query 113 TACCTCCGGGAAGAA----ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| || || || | | |||||| |||||| |||||||||||| || || Sbjct 3278 TACCTCTA--AATAACTTTAC-CTCAACGCTGTTCCTAAAAACATTTCGGGGAGTACGAG 3222 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | ||||||||| |||||||||||||| |||||| |||||| | ||||||| Sbjct 3221 CTATTTCCCAGTTTGATTAGCCTTTCACCCCTACCCACAGATCATCCGGAAACTTTTCAA 3162 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | |||||||||||||| || ||||| |||||||||| |||||| |||| Sbjct 3161 CGTTTATCGGTTCGGTCCTCCAGTACGTGTTACCGCACCTTCAACCTGTCCATGGGTAGA 3102 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | |||| |||| || ||| ||||||||||||| |||||||||||||| Sbjct 3101 TCACAAGGTTTCGCGTCTACCTCCCCTGACT-ATACGCCCTATTCAGACTCGCTTTCGCT 3043 Query 349 ACGGCTAC----CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404 ||| | | | | || ||||||| || | | || |||||| ||||||||| Sbjct 3042 TCGGATCCGTGTCTTAAAC-ACTTAACCTTGCCAGAGAAGAGTAACTCGTAGGCTCATTA 2984 Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464 | |||||||||||||||||| | |||| | || |||||||| | ||||| | Sbjct 2983 TGCAAAAGGCACGCCGTCAC--GCCACCT-----GGAC----GCTCCGACCGCTTGTAAG 2935 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCAC 523 |||| ||||||||| |||||||||||||| | ||||| ||||||||||||||||||| Sbjct 2934 CACACAGTTTCAGGTTCTATTTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCCTCAC 2875 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| | |||||||||||| |||| ||| |||| ||| |||| Sbjct 2874 GGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTACCGGATGGTGCCGGCAGA 2815 Query 584 TTCACAC 590 ||| ||| Sbjct 2814 TTCCCAC 2808 >seq2584 Length=1774 Score = 111 bits (122), Expect = 6e-22 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| ||||| |||||||| || |||| | | |||| Sbjct 1774 TTTGATTGGCCTTTCACCCCTAGCCACAAGTCATCCCAATCTATTGCAACAGATGCGGGT 1715 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||| || ||||| ||||||||||| ||||| |||||||||| | || Sbjct 1714 TCGGTCCTCCAGTAAGTGTTACCTTACCTTCAACCTGCTCATGGCTAGATCACTTGGTTT 1655 Query 300 CGGGTC 305 |||||| Sbjct 1654 CGGGTC 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817345445120