Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001232.1 Length=307 Score E Sequences producing significant alignments: (Bits) Value seq245 282 7e-74 seq18 91.5 3e-16 seq656 73.4 7e-11 >seq245 Length=62233 Score = 282 bits (312), Expect = 7e-74 Identities = 246/306 (80%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 2 GAAATCGACGATAAAGAAGTCACACTCGCCCACGGCCCCTTCAAGACACTGGGCATGCAG 61 || ||| |||| ||||||||||| ||||||||||| |||||||||||| |||| |||| Sbjct 8029 GAGATCAACGACAAAGAAGTCACGCTCGCCCACGGTCCCTTCAAGACATTGGGTATGCCA 8088 Query 62 GGCATGACGATGACGTTTCCACTTGCCAATCCTACCCTGATTCAGGGTCTGAAAACGGGC 121 |||||||||||||| || || || |||| |||| | ||||| |||| || ||||||||| Sbjct 8089 GGCATGACGATGACTTTCCCTCTCGCCACTCCTGCTCTGATGAAGGGCCTAAAAACGGGC 8148 Query 122 GACAAGGTTCGGGTCGCGGTGAGCCAAACCGACGATGGATTGCGTGTCGAACGTCTAGAT 181 |||||||||||| |||| || ||||| || |||||||| ||||||| |||||||| || Sbjct 8149 GACAAGGTTCGGATCGCTGTTAGCCAGACGGACGATGGTCTGCGTGTTGAACGTCTGGAA 8208 Query 182 AAAACGGGAGGTCAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTT 241 | || || |||||||||| || ||||| || || ||||| || |||||||||||| Sbjct 8209 CGCTCTGGGGGCCAGCCATGATTGCGGCCCTTATTCGCTGGTCGGTGGCCAACCGCTTTC 8268 Query 242 TGGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCAGAACACAC 301 | ||| || ||||||| || |||||||| || ||||| |||||| | ||||| | || | Sbjct 8269 TTGTGTTGCTGGCGACGCTGTTCGTCACGGCATGGGGGATCTGGGCGGTTCAAAGTACGC 8328 Query 302 CAATCG 307 | |||| Sbjct 8329 CCATCG 8334 >seq18 Length=126356 Score = 91.5 bits (100), Expect = 3e-16 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 183 AAACGGGAGGTCAGCCATGATCGCTGCCCTCATCCGTTGGTCTGTTGCCAACCGCTTTTT 242 || |||||| | ||||||||||| | || || ||||| || |||||||||||||| Sbjct 65671 AACCGGGAGCCCGGCCATGATCGCCCTGTTGATTCGCTGGTCGGTGGCCAACCGCTTTTT 65612 Query 243 GGTGCTGTTGGCGACACTTTTCGTCACAGCTTGGGGCATCTGGTCAGTTCAGAACACACC 302 |||| |||||||||| | ||||| || || ||||| | ||||| | |||||||| || Sbjct 65611 GGTGTTGTTGGCGACTTTATTCGTGACGGCCTGGGGTTTGTGGTCGATCCAGAACACCCC 65552 >seq656 Length=17958 Score = 73.4 bits (80), Expect = 7e-11 Identities = 63/78 (81%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 211 CTCATCCGTTGGTCTGTTGCCAACCGCTTTTTGGTGCTGTTGGCGACACTTTTCGTCACA 270 || ||||| |||||| | ||||||||||||||| |||||||||| ||||| | || Sbjct 12686 CTGATCCGCTGGTCTATCAGCAACCGCTTTTTGGTCTTGTTGGCGACTGTTTTCATTACG 12745 Query 271 GCTTGGGGCATCTGGTCA 288 || |||||||| |||||| Sbjct 12746 GCCTGGGGCATATGGTCA 12763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 879876756000