Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3 654 0.0 seq158 394 2e-107 seq1400 279 1e-72 seq1401 192 1e-46 seq2584 102 2e-19 >seq3 Length=3814 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1375 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 1318 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 1317 GT-GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 1263 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1262 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 1204 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1203 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACA 1145 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 AAGTCTGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 1085 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 1025 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 967 >seq158 Length=3153 Score = 394 bits (436), Expect = 2e-107 Identities = 342/410 (83%), Gaps = 11/410 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || |||| ||||||||| |||| ||||||| ||||||| || ||| Sbjct 2371 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGT-GTT 2427 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| | |||||| | ||||| |||||||| |||||| Sbjct 2428 ACCGCACCTT-CATCCTGGCCATGAG-TAGATCACTTGGTTT-CGGGTCTACA-CCCAGC 2483 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| ||||||| | |||||| ||| | ||||| || |||||| |||||| ||| | Sbjct 2484 GACTGATCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATCTGGTTAACCTT-G 2541 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 2542 CCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGAACAA-GTCC 2600 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 ||||| |||| ||||| ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 2601 GCTCCTACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCT-TCCGGGGTTC 2659 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||| | | |||||||||||||| Sbjct 2660 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTG 2719 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||| | || |||| ||| |||||| Sbjct 2720 GAGGATGGTCCCCCCATATTCAGACAGGATGTCACGTGTCCCGCCCTACT 2769 >seq1400 Length=5517 Score = 279 bits (308), Expect = 1e-72 Identities = 312/402 (78%), Gaps = 19/402 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 3187 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 3131 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| ||||||| |||| || |||||| | ||||| || ||||| |||| Sbjct 3130 ACCGCACCTT-CAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCCCCT- 3075 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAAGC 184 ||||| |||||||| | ||||||||||| |||| || ||| | || | |||| | Sbjct 3074 GACTATACGCCCTATTCAGACTCGCTTT-CGCTTCGGATCCGTGTCTTAAACACTTAACC 3016 Query 185 TTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || |||| ||| | ||| ||| | | |||||| ||||||| |||| ||||| | || Sbjct 3015 TT-GCCAGAGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACGCCACC- 2958 Query 244 AGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| ||||| || ||||||| ||| || |||||||| |||||||||||||||| | | Sbjct 2957 --TGGACGCTCCGACCGCTTGTAAGCACACAGTTTCAGGTTCTATTTCACTCCCCTGTTC 2900 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 2899 GGGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTT 2840 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTC 403 |||||| ||||||| || || |||| |||| | |||| Sbjct 2839 AGCCTTACCGGATGGTGCCGGCAGATTCCCACAAGGCGTCTC 2798 >seq1401 Length=5644 Score = 192 bits (212), Expect = 1e-46 Identities = 292/403 (72%), Gaps = 21/403 (5%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 |||||||| ||| |||||||||||||| || ||||| ||| ||||||| || Sbjct 3002 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGACGTC-TTACCGTCGCTT-CAACCTGGCC 2945 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTA-GA-CGCCCTAGTAAG 147 || || |||||| | | | || |||||||| | || |||| || ||||||| | | Sbjct 2944 ATGGG-TAGATCACTCCGCTT-CGGGTCTAGAGCAT-GCCACTACGATCGCCCTATTCGG 2888 Query 148 ACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCAC-TGAAAATAAGTCGC 206 ||||||||| ||||||| || ||| | ||| | | | | || || || | ||| |||| Sbjct 2887 ACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTCGCGACATGCCACTAACTCGC 2829 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCC-----AACAAAGTG------GGCTCCCA 255 | | |||| | ||||||| |||| |||||| | ||| || ||||| | Sbjct 2828 AGGCTCATTCTTCAAAAGGCACGCCATCACCCCCAGCAGTAAACTGCTCGAAGGCTCTGA 2769 Query 256 CTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGC 315 | | ||||| || ||||||||||| |||||||||||||||| ||||||| |||||| | Sbjct 2768 CGGATTGTAAGCGCACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCAC 2710 Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375 |||||||||||||||||||| | |||||||||| | |||||| || ||| || || Sbjct 2709 CTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTCAGGCTTATCGGGTG 2650 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||| || ||||| || | |||| || || | || ||||| Sbjct 2649 GTCCCGACAGATTCACACCAGATTTCACGGGCCCGGTGCTACT 2607 >seq2584 Length=1774 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375 ||||||||||||||||| |||| |||||||||| || |||| |||| ||||||| || Sbjct 1449 CTTTCCCTCACGGTACTGGTTCGCTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGTG 1390 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| |||||| |||||||| |||| |||| ||| ||||||| Sbjct 1389 GTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTC 1346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241426113920