Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1401 260 3e-67 seq216 197 3e-48 seq1400 181 2e-43 seq1368 167 5e-39 seq2 78.8 2e-12 >seq1401 Length=5644 Score = 260 bits (288), Expect = 3e-67 Identities = 241/304 (79%), Gaps = 1/304 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct 699 GGCGTCGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 640 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| |||||||| | Sbjct 639 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGTCGGCTACCCGT 580 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| |||| | ||||||| | || || ||||||| ||||||| | || Sbjct 579 CGTCGCCTTGGTAGGCCATTACCCCACCAACAAGCTGATAGGCCGCGGGCCCATCCTGCA 520 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||||||||||| | | | |||| || | || ||| ||||||||| Sbjct 519 CCGATAAATCTTTCCACCACCCACCATGCGATAGGAGGTCA-TATCCGGTATTAGACCCA 461 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | |||| || || | ||||| | | |||||||||||||||||| ||| Sbjct 460 GTTTCCCAGGCTTATCCCGAAGTGCAGGGCAGATCACCCACGTGTTACTCACCCGTTCGC 401 Query 301 CACT 304 | || Sbjct 400 CGCT 397 >seq216 Length=1692 Score = 197 bits (218), Expect = 3e-48 Identities = 231/306 (75%), Gaps = 7/306 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||||||||||| Sbjct 637 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 578 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||| | | ||| |||||||| || | ||| ||| Sbjct 577 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 518 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| | ||||||||| |||||| | | || ||||| | Sbjct 517 CGTCGCCTTGGTGAGCCATTACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATA 458 Query 181 GCG-ATAAATCTTTGGTCAAAGAATGATGCCATCC-TCTGACATTATGCGGTATTAGCGT 238 ||| | | |||| || | | || | ||| |||||||||||||||| Sbjct 457 GCGCAAGGCCCGAAGGTC---CCCTGCTTTCTCCCGTAGGAC-GTATGCGGTATTAGCGT 402 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||| ||||||| || | || |||||| || || | | |||||||||||||| Sbjct 401 CCGTTTCCGGACGTTATCCCCCACTACCAGGCAGATTCCT-AGGCATTACTCACCCGTCC 343 Query 299 GCCACT 304 ||| || Sbjct 342 GCCGCT 337 >seq1400 Length=5517 Score = 181 bits (200), Expect = 2e-43 Identities = 225/306 (74%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| || ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | ||| |||||||| | ||| || Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | | ||||||| ||||| ||| ||||||||| Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| |||| || | || |||| ||||| || ||||||||| ||| | | Sbjct 533 CCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTATGCGGTCTTA--ATCC 476 Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | |||| | ||| || || |||| ||||||| ||| ||||| ||||||| | Sbjct 475 GAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 416 Query 299 GCCACT 304 |||||| Sbjct 415 GCCACT 410 >seq1368 Length=2069 Score = 167 bits (184), Expect = 5e-39 Identities = 133/160 (83%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| ||| || ||||||||||||||||||||| Sbjct 1665 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 1724 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | || |||||||| || ||||| ||| Sbjct 1725 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGAT 1784 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 || | |||||| |||| ||| | |||||||| |||||| Sbjct 1785 CGATGCCTTGGTAGGCTTTTACCCTACCAACTAGCTAATC 1824 >seq2 Length=66720 Score = 78.8 bits (86), Expect = 2e-12 Identities = 111/154 (72%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | || | | |||||| |||||| ||||||||||| || | | ||| | Sbjct 47482 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACTGCTG--TCTCTGACGAGATT 47425 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 | | | | ||| | ||||||||| | ||| |||| ||| || |||| ||| |||| Sbjct 47424 GACCTTTTTTTCAATGTCAATGTGGCTGATCATCCTCCCAGACCAACTACGAATCCTCGG 47365 Query 127 CTTGGTGGGCTATTATCTCACCAACTA-CCTAAT 159 |||| | |||| ||| | ||||||| |||||| Sbjct 47364 CTTGTTAGGCTTTTACCCTTCCAACTACCCTAAT 47331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998260174080