Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq328 515 9e-144 seq1830 253 5e-65 seq3401 154 3e-35 >seq328 Length=55360 Score = 515 bits (570), Expect = 9e-144 Identities = 351/395 (89%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5383 CGATGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 5442 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 5443 CTGTGGCGCGGTCTCGGGTTTCCACGCACTGATCTCCTCGGGCACCACGCCCAAGTTGCT 5502 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 |||||||| | || |||||||||||||| |||||||||||| |||||||||||||||| Sbjct 5503 GGCCAGTGAAGGGCACGCCCGTTACATCGGCTACGGCGGCATGTTGATGGAGTCGTTCGT 5562 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| Sbjct 5563 GGCCATCATGGCGATGGTTGCCGCTTCGGTGATCGAGCCAGGGGTGTACTTCGCCATGAA 5622 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || ||||||||| |||||||| | |||||||||||||||||||| || Sbjct 5623 CAGCCCGGCCGCGATTGTCGGCGGTGACGTGGTGGCTGTGGCGCAAACCGTCAGCAGCTG 5682 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| ||||| || || ||| || ||| || ||||| | || ||||| |||| Sbjct 5683 GGGTTTTGCAATTACCCCGGAAGCGTTGCAGGCGGTGGCCCATGACATTGGTGAGTCCAC 5742 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| |||||||| || |||||||| |||| Sbjct 5743 CATCCTGGCCCGTGCCGGTGGTGCGCCGACCCTGG 5777 >seq1830 Length=24667 Score = 253 bits (280), Expect = 5e-65 Identities = 300/399 (75%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||| ||||| | || ||| |||| ||||||||| |||||||||||||| || || Sbjct 21986 CGACGGCTCCGGCCCCGTCTGGTCGGGCAACCTGTTCCCCTTCCTGTTCATCACGATCGC 22045 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||| || || ||||| || ||||| || ||||| ||||||||||||||||| ||| || | Sbjct 22046 CTGCGGTGCCGTCTCCGGCTTCCACGCCCTGATTTCCTCGGGCACCACGCCGAAGATGAT 22105 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || ||||| ||||| | |||||| || |||| |||||||||||| |||||||| Sbjct 22106 TGAAAACGAAAGCCACGCCCGCTTCATCGGCTATGGCGCCATGCTGATGGAATCGTTCGT 22165 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 ||||||||||| |||| ||||||||| || ||||| ||| | || ||||||||||| Sbjct 22166 CGCCATCATGGCCCTGGTGGCCGCCTCGACCATCGAGCCGGGCATCTATTTCGCCATGAA 22225 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGAC-GTGGTCACCGTGGCGCAAACCGTC-AGCAGT 298 ||||||||| ||| | |||||| |||| | | | | | || || || || |||| Sbjct 22226 CAGCCCGGCCGCCCTGATCGGCA-CGACGGCAGACTCGGCCGCCCAGGCCATCTCGCAG- 22283 Query 299 TGGGGCTTTGCCATTACGCCTGAGGCGCTGTCG--GCCGTTGCCCACAATATCGGTGAAA 356 |||||||| ||| ||||| || |||| || | || ||| | | | || || Sbjct 22284 TGGGGCTTCTACATCACGCCGGAAATGCTGACGCAGACG--GCCAAGGACGTGGGCGAGC 22341 Query 357 CCACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 || |||| | | || || |||||||||||||| |||| Sbjct 22342 ACAGCATCATCTCGCGCGCGGGCGGCGCGCCGACCCTGG 22380 >seq3401 Length=5622 Score = 154 bits (170), Expect = 3e-35 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 32 CTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCGGGTTTCCATGCGCTG 91 |||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||| Sbjct 4124 CTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCACTCTCGGGCTTCCACGCACTG 4065 Query 92 ATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCATGCCCGTTACATCGGT 151 ||| | || || || ||||| ||| |||||| | || ||||| || ||||| Sbjct 4064 ATCGCGTCCGGTACGACGCCAAAGCTGCTCGAGAAGGAAAGCCAGACCAAGATGATCGGG 4005 Query 152 TACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCT 206 |||||||||||||||| || ||||| || || |||||||| |||| |||||| Sbjct 4004 TACGGCGGCATGCTGACCGAATCGTTTGTCGCGATCATGGCTCTGGTCACCGCCT 3950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161437317920