Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq28 526 5e-147 seq1193 156 1e-35 >seq28 Length=112092 Score = 526 bits (582), Expect = 5e-147 Identities = 353/394 (90%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||| || || | Sbjct 15087 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGGCCTACCT 15146 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct 15147 GGTCCTGCTGCTCAGCCAGGCCGTAGCGGAATTTGCGCACGCCCAGGAAGTGTTCCAGCA 15206 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 15207 GGTCAGCGGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTCACGGCCTTGC 15266 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 ||||||||||||| | || ||||| ||||| || |||||||| |||||||||||| | | Sbjct 15267 GGCAGATCTTCGCCAGTTGACGCTCAAGGCCCCGTACACCGGCCTCGCGGGTGTAGAAAC 15326 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | | |||||||||||||| | || | ||||||||||||||||| || |||||||| |||| Sbjct 15327 GAATGATGTCGCGGATCGCGTCGGCATCAAATTCGATCTCGCCTTTTTTCAGGCCGTTGG 15386 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 ||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| Sbjct 15387 CCGCAATCTGCTTGGGCGAGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGT 15446 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||| |||||||| |||||||||||||| Sbjct 15447 AACCCGGCAGACGAATCACCTCCATCCGGTCCAG 15480 >seq1193 Length=13019 Score = 156 bits (172), Expect = 1e-35 Identities = 283/406 (70%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||| | ||||| ||||| || ||||| || || | Sbjct 6602 CGATGGTCAGCAGATCGCCGCCCACTTCCGTCCATGCCAGACCGACCACCTGGCCCACCT 6543 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGG- 119 | | | | ||| || | || | | | ||||||||||||||| | |||||| Sbjct 6542 GGTTTTCTTTCTCTGCGACACCAAAATCGTAGCGGCGCACGCCGAGGAACTTGTCCAGGT 6483 Query 120 -----GAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTC--CAGC-GCATGTTCCTTGA 171 |||| | | |||| ||| | | |||||| || | |||| ||||| Sbjct 6482 TCTTCGAGTTGACGATGACTTTCTTGTCGGAC--TTTTTCAGCAACAGCAT----CTTGA 6429 Query 172 CCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGG 231 || |||||||||||||||||| | | ||||| || |||||| || ||||| || | Sbjct 6428 CCACCTTGCGGCAGATCTTCGACACTTCCCGCTCGAGCGAACGCACGCCCGCTTCCCGCG 6369 Query 232 TGTAGTAGCGGACGATGTCGCGGATCGTGCCGACT--TCAAATTCGATCTCGCCCTTCTT 289 |||||||||||| ||||||||| | | ||||||| | | ||| || | | ||| Sbjct 6368 TGTAGTAGCGGATGATGTCGCGCA--GGGCCGACTCGGCCACCGAGATTTCATCTTCCTT 6311 Query 290 CAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG-GCGATGTTGATCTTCT 348 || ||||||| | |||||||| ||| ||||| | || |||||| || |||| | Sbjct 6310 CAAGCCATTGTTCTTGATCTGCTTCGGCAGCAGGTA-GCGCTGCGCGATGCTGGTCTTTT 6252 Query 349 CGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | ||||| ||||| || | |||||| ||||||||||| ||||| || Sbjct 6251 CATCTTCCGTGTAGCCGGACAGGCGGATCACTTCCATGCGGTCGAG 6206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158237766080