Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq1910 336 8e-90 seq208 282 2e-73 seq165 96.9 1e-17 >seq1910 Length=22743 Score = 336 bits (372), Expect = 8e-90 Identities = 378/502 (75%), Gaps = 3/502 (1%) Strand=Plus/Minus Query 23 GTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCATTACCTGGCTGTC 82 || ||||||||||| || |||| | ||||| || ||| |||| | ||| ||||||| Sbjct 10734 GTCTGGTGCGGCGATATCACCTATGTTTGGGCGCAGGGGCGATGGTACTACTTGGCTGTG 10675 Query 83 GCGCTGGATCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAGACACCCCGGACGC 142 | | ||||||| | | | ||||| | ||||| ||||| || | || |||| |||| Sbjct 10674 GTGTTGGATCTGTTCGCTCGCCGAGCGGTGGGCTGGGCATTCTCGCTACGGCCCG-ACGC 10616 Query 143 CGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGA-CGACCTCATGGTC 201 ||| || | | ||| |||||||| ||||| | ||| || || ||||| || || | Sbjct 10615 CGACCTTGTTGTGCAAGCGCTGGAAATGGCCTTTGAGCA-GCGCGGTCGACCGCAGGGGC 10557 Query 202 TGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAGCGGCTGT 261 ||||| |||| ||||||||||| ||||| || || || ||| || ||||| ||| Sbjct 10556 TGCTGTTTCATTCGGATCAAGGTAGTCAGTACGCCAGCCGAAAATTCCGTCAGCGATTGT 10497 Query 262 GGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAATGCGCCAA 321 |||| ||||| || || || || ||||| || ||||||||||| |||||||| || || | Sbjct 10496 GGCGCTATCGGATACGACAAAGTATGAGCCGTCGGGGAAATTGTTGGGACAACGCCCCGA 10437 Query 322 TGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTACCGAACGG 381 |||| || ||||||||||||| |||||||||||| | ||| | || |||||| |||| Sbjct 10436 TGGAACGGCTGTTCCGCAGCTTCAAAACGGAGTGGCTGCCGTCAACCGGTTACATGACGG 10377 Query 382 CTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCC 441 | | ||| || || || || |||||| | | | | ||||| ||||| |||||||| || | Sbjct 10376 CACGAGAGGCACAACGGGACATCAGCTATTACCTGATGCACCGGTATAACTGGATACGGC 10317 Query 442 CCCATCGATTCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGT 501 | |||| |||||| || |||||||| || |||||||||||||||||||| |||| Sbjct 10316 CACATCAGTTCAACCAGGGACTGGCGCCGGCCGTCGCCGAAGAAAAACTTAACGTAGTGT 10257 Query 502 CCGGGATTAGTTGACCACTACA 523 ||||||| ||||||||||||| Sbjct 10256 CCGGGATGGGTTGACCACTACA 10235 >seq208 Length=140336 Score = 282 bits (312), Expect = 2e-73 Identities = 374/514 (73%), Gaps = 4/514 (1%) Strand=Plus/Minus Query 12 CACCC-ACCCCGGTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCAT 70 ||||| | || ||| ||||||||||| || ||||||||||||| || || |||||| Sbjct 13143 CACCCGAACCGGGTTTGGTGCGGCGATATCACCTACATCTGGGCGCAAGGTCGCTGGCAT 13084 Query 71 TACCTGGCTGTCGCGCTGGATCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAGA 130 |||||||| || | ||||||||| | | | || ||| | | | |||||| | ||| | Sbjct 13083 TACCTGGCCGTGGTGCTGGATCTGTACACCCGGCGGACGATTGGCTGGGCGCTTTCCACA 13024 Query 131 CACCCCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGACG 190 | || ||| |||| |||| || ||| || || ||||| ||| ||| || || | Sbjct 13023 AAGCC-GGATGCCGCGCTGGTGATCAAGGCCCTCGACATGGCCTACGAGCA-GCGCGGCA 12966 Query 191 A-CCTCATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTC 249 | || || ||| | |||| || ||||| || ||||| | || || | || | Sbjct 12965 AGCCACAGCAGGTGCGGTTTCATTCCGATCAGGGCAGCCAGTACACCAGCCGCCTGTTCC 12906 Query 250 GCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGG 309 | |||||||| |||||||| || || |||||||||||||||||||| || ||||||| Sbjct 12905 GGCAGCGGCTATGGCGTTACCGGATCGAACAGAGCATGAGTCGCCGGGGGAACTGCTGGG 12846 Query 310 ACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGG 369 | || |||| ||||||||| |||| |||||| ||||| | |||||||| || | || | Sbjct 12845 ATAACTCGCCGATGGAGCGCCTGTTTCGCAGCCTGAAATCAGAGTGGATTCCAGCGACTG 12786 Query 370 GTTACCGAACGGCTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACA 429 |||||| ||||| ||||||||||| || |||||||| | | | ||||| || |||| Sbjct 12785 GTTACCTGACGGCCATGGAAGCCCAGCGGGACATCAGCCATTACCTGATGCACCGCTACA 12726 Query 430 ACTGGATTCGCCCCCATCGATTCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAAC 489 | ||||| | || |||| ||| || ||||| ||||||| ||| |||||||||| Sbjct 12725 AGTGGATCAGGCCACATCAGCACAATGGCGGGCTACCGCCAGCGGTGGCTGAAGAAAAAC 12666 Query 490 TTAACGTCGTGTCCGGGATTAGTTGACCACTACA 523 |||| |||||||| ||||||||||||| Sbjct 12665 TTAAACCACAATCCGGGATGGGTTGACCACTACA 12632 >seq165 Length=230050 Score = 96.9 bits (106), Expect = 1e-17 Identities = 138/188 (73%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 46 CATCTGGGCCCATGGGAAATGGCATTACCTGGCTGTCGCGCTGGATCTTTGCTCGCGCCG 105 |||||||||| | ||||||||||||||||| ||||||| |||||||| | | | ||| | Sbjct 222165 CATCTGGGCCGA-GGGAAATGGCATTACCTAGCTGTCGTTCTGGATCTCTACGCACGCTG 222107 Query 106 GGTGGTGGCTTGGGCGTTGACCAGACACCCCGGACGCCGATCTGGCTATGCGGGCGCTGG 165 | |||| | |||| || |||||| ||||| || ||||| | || |||| ||| Sbjct 222106 AATTGTGGGTAGGGCACTG-TCAGACA-GCCGGATGCGGATCTAGTCATCAAGGCGTTGG 222049 Query 166 ATATGGCTTACCAGC-CTGCACGACGACCTCATGGTCTGCTGGTTCACTCGGATCAAGGG 224 | ||||||||| ||| | | | | ||| | || |||||| || |||| |||| || Sbjct 222048 ACATGGCTTACGAGCAACGTTCTA-GGCCTTAAGGGCTGCTGTTTGACTCAAATCAGGGC 221990 Query 225 TCGCAGTA 232 ||||| || Sbjct 221989 TCGCAATA 221982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1846133330795