Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1401 354 2e-95 seq3 192 1e-46 seq158 161 2e-37 seq1400 138 3e-30 seq5127 105 2e-20 >seq1401 Length=5644 Score = 354 bits (392), Expect = 2e-95 Identities = 338/442 (76%), Gaps = 44/442 (10%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||||||||||||| |||||| |||||||||||| |||| || ||| || || Sbjct 3660 CGGCTACGCCTGTCGGCCTCGTCTTAGGTCCCGACTCACCCTGGGCGGATTAACCTGGCC 3601 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| | |||||||||| | ||| ||| |||| ||||||||||||||| Sbjct 3600 CAGGAACCCTTGGTCATTCGGCGGACGAGTTTCTCACTCGTCTTTCGCTACTCATGCCTG 3541 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG--ACACG 178 |||||||||||| | |||||| | ||||||| || ||||| || | ||||| Sbjct 3540 CATTCTCACTCGTGTGGCCTCCACGGCTAGGTCACCCTGCCGCTTC--CATGGCCACACG 3483 Query 179 ACGCTCCCCTACCCAACCACACAGGT---------------------------------- 204 ||||||||||||||| ||||||| | Sbjct 3482 ACGCTCCCCTACCCATCCACACACCTGCCCAACACTCCGCAGAGTGAAGGGGGGCTATTG 3423 Query 205 ------TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258 |||| ||||||||| || |||| |||||||||||||| ||||||| | |||| Sbjct 3422 CGTGAATGCCGCAGCTTCGGTGGTGTACTTGAGCCCCGCTACATTGTCGGCGCAGGATCA 3363 Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 3362 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTG 3303 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 ||||||| ||| || ||||||||||| ||||| ||| | ||||||| ||||||||| Sbjct 3302 GTTGTCTTCGCGACCCCACATCCTTTTCCACTTAGTACACGCTTAGGGACCTTAGCTGGC 3243 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||| Sbjct 3242 GATCTGGGCTGTTTCCCTCTCG 3221 >seq3 Length=3814 Score = 192 bits (212), Expect = 1e-46 Identities = 291/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 1974 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 1915 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | | || |||||||| | Sbjct 1914 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTAT-CGTTACTCATGTC 1856 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 1855 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 1798 Query 177 CGACGCTCCCCTACCCAACCACAC--AGGTTG---CCACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| | |||| || |||||||| | || || || Sbjct 1797 GAACGCTCCTCTACCGCATCACCCGAAGGTGATACCCGTAGCTTCGGTGTATGGTTTGAG 1738 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||| Sbjct 1737 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAG 1678 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 1677 GGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTT 1618 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 1617 AACCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 1573 >seq158 Length=3153 Score = 161 bits (178), Expect = 2e-37 Identities = 282/400 (71%), Gaps = 11/400 (3%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCT 62 |||||| | || ||||||||||||| ||||||||||| | | || ||| |||| | Sbjct 1777 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCTCCGATGAACGTTGAACAG 1836 Query 63 GGAACCCTTGGATAATCGGCG--GACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| | || | | ||||| || | ||| | ||| | | ||||||||||| | | Sbjct 1837 GAAACCTTGGGCTTA-CGGCGTGGAGGCTTTTCACCCCCATTAT-CGCTACTCATGTCAG 1894 Query 121 CATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 ||||| |||| | || | ||||| || | | || | || |||| | || ||| Sbjct 1895 CATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCGCAGGCTTACAGA 1952 Query 179 ACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238 |||||| |||||| | | || ||||||||| | | |||| |||||| | Sbjct 1953 ACGCTCTCCTACCATATNNNNNNNATATCCGCAGCTTCGGTGACTGGCTTA-GCCCCGTT 2011 Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCT 298 |||| || |||| | | ||| || |||||||||||||||| ||||| || ||||||| Sbjct 2012 ACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCT 2071 Query 299 GCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACC 358 ||||| |||||||| ||||| ||| | || |||| || ||| ||||| || || Sbjct 2072 GCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTTCCACTTAGCCA-A 2130 Query 359 ACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 ||| ||| ||||||||| | |||||| ||||||||||| Sbjct 2131 TCTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 2170 >seq1400 Length=5517 Score = 138 bits (152), Expect = 3e-30 Identities = 151/197 (77%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| |||||||| | | |||||| |||| | |||||| || ||| || ||| | Sbjct 3581 CCATAGCTTCGGTGTACTACTTAATGCCCGTTT-ATTATCCATGCACGATCGCTCGACTA 3523 Query 267 GTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||| ||||||||||||| || || ||||||||||||||||||| |||| | ||||| Sbjct 3522 GTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCT 3463 Query 326 ACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 | |||| ||| || || | | ||| ||| |||| ||| |||||||||||| ||| Sbjct 3462 ATGCAATCGCACCTCGTTAGTTCAACTTAGTAGTAACTTGGGGACCTTAGCTGATGGTCT 3403 Query 384 GGGCTGTTTCCCTCTCG 400 ||| | ||||||||||| Sbjct 3402 GGGTTCTTTCCCTCTCG 3386 >seq5127 Length=482 Score = 105 bits (116), Expect = 2e-20 Identities = 219/319 (69%), Gaps = 28/319 (9%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | |||| ||||| | Sbjct 314 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 255 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||||||||||| |||||| |||| || | | || |||||||| | | Sbjct 254 CAGGAACCCTTGGACTTTCGGCG--AGGGAGTCTCTNNNNNNA-TCGTTACTCATGTCAG 198 Query 121 CATTCTCAC-TCGCATCAACTCCACCACACAGTCACCCGGC-AGCTTC-ACCACTGACAC 177 ||||||||| || || | ||||| | | |||| | | |||| || || ||| Sbjct 197 CATTCTCACTTCTGAT-ACCTCCAAGA-GCCCTCACGGGTCTCTCTTCAACGGCTTACAG 140 Query 178 GACGCTCCCCTACCCAACC-----ACAC--AGGTT--------GCCACAGCTTCGGCGGA 222 ||||||| ||||| || || | ||||| |||||||||||| | | Sbjct 139 AACGCTCCGCTACCACTCCCGGGAACCCGAAGGTTCCAAAGAATCCACAGCTTCGGTGTA 80 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTA 277 | ||| ||||||| |||||| ||||||| | | ||| |||||||||||| ||| Sbjct 79 TGGCTTTAGCCCCGGTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTA 20 Query 278 CGCACTCTTTCAAGGATGG 296 ||| ||||| || ||||| Sbjct 19 CGCTTTCTTTAAATGATGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177435077120