Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1368 282 4e-74 seq216 196 4e-48 seq1401 131 1e-28 seq1400 102 7e-20 >seq1368 Length=2069 Score = 282 bits (312), Expect = 4e-74 Identities = 159/161 (99%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 747 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGCGATTAGCTCCCCCTCGCG 806 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 GGTTGGCGGCGCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 866 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 867 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 907 >seq216 Length=1692 Score = 196 bits (216), Expect = 4e-48 Identities = 140/161 (87%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||| Sbjct 1561 TCGAGTTGCAGACTGCGATCCGGACTACGATCGGTTTTCTGGGATTAGCTCCACCTCGCG 1502 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| ||||||||| ||||||||| ||||||| ||||| || ||||||||| Sbjct 1501 GCTTGGCAACCCTCTGTACCGACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCA 1442 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1441 TGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1401 >seq1401 Length=5644 Score = 131 bits (144), Expect = 1e-28 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| |||||| ||||| |||| || Sbjct 1582 TCGAGTTGCAGACCCCGATCCGAACTGAGACCAGCTTTAAGGGATTCGCTCCACCTCACG 1523 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| |||||||| | |||||||||||| |||||||| || Sbjct 1522 GTCTCGCAGCCCTCTGTACTGGCCATTGTAGCATGTGTGAAGCCCTGGACATAAGGGGCA 1463 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| ||||||||||| |||||||||||||||| Sbjct 1462 TGATGACTTGACGTCGTCCCCACCTTCCTCCG 1431 >seq1400 Length=5517 Score = 102 bits (112), Expect = 7e-20 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| || |||| ||| | | || Sbjct 1627 TCGAGTTGCAGACCTCTATCCGAACTGTGAATGGCTTTTTGAGATTCGCTTGCTGTTGCC 1568 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 1567 AGCTTGCTGCCCTCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 1508 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| ||||| |||||||| | ||||| Sbjct 1507 TGATGACTTGACGTCGTCCCCTCCTTCCTCTCTGTTTG 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415943559850