Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4315 260 2e-67 seq216 221 2e-55 seq1368 203 5e-50 seq1401 199 7e-49 seq1400 190 3e-46 seq2 91.5 2e-16 >seq4315 Length=368 Score = 260 bits (288), Expect = 2e-67 Identities = 227/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||| Sbjct 366 CCCACGCTTTCGCACCTCAGCGTCAGTATCGAGCCAGTGAGCCGCCTTCGCCACTGGTGT 307 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||| |||||||| |||||| ||||||||| | |||||| | || Sbjct 306 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCTCGAAC 247 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| |||| ||||||||||| | |||||| |||||| Sbjct 246 TCAAGACTACCAGTATCAAAGGCAGTTCCGGGGTTGAGCCCCGGGATTTCACCCCTGACT 187 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| || |||||| |||| |||||||| | |||||| ||| ||| || Sbjct 186 TAATAGTCCGCCTACGTGCGCTTTACGCCCAGTAAATCCGAACAACGCTAGCCCCCTTCG 127 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 126 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 85 >seq216 Length=1692 Score = 221 bits (244), Expect = 2e-55 Identities = 218/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| Sbjct 1011 CCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCCACTGGTGT 952 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | ||||||||||||||||||||||||||| | |||||| ||||| | || Sbjct 951 TCCTTCCTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCTACCATAC 892 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||||| ||||||| |||||||||| | ||||||||| ||| Sbjct 891 TCTAGCTCGTCAGTTTTGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCAACT 832 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | || ||||| ||| |||||| |||| ||| |||| |||||||||| ||| | Sbjct 831 TAACGAACCACCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCTG 772 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||| ||||||||| |||||||| Sbjct 771 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 730 >seq1368 Length=2069 Score = 203 bits (224), Expect = 5e-50 Identities = 221/291 (76%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||| | |||| | |||||||||| ||||| Sbjct 1291 CCCACGCTTTCGTGCATGAGCGTCAATCTTGACCCAGGGGGCTGCCTTCGCCATCGGTGT 1350 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCT-CCAGCA 119 |||||| ||||||||||||||||| ||||||| ||||||| ||||| |||| | Sbjct 1351 TCCTCCACATATCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTGCCAG-A 1409 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || |||| || |||||| |||||||||| | ||||||||| ||| Sbjct 1410 TTCTAGCCTTGCAGTCTCCAATGCAATTCCCAGGTTGAGCCCGGGGATTTCACATCAGAC 1469 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||| | | | |||||| |||| ||| |||| |||||||||| ||||| Sbjct 1470 TTACAAAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTAC 1529 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1530 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 1580 >seq1401 Length=5644 Score = 199 bits (220), Expect = 7e-49 Identities = 217/290 (75%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||| Sbjct 1044 CCCACGCTTTCGTTCCTCAGCGTCAGTTACTGCCCAGAGACCCGCCTTCGCCACCGGTGT 985 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| |||||||| | || || ||| || Sbjct 984 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGTCTCCCCTGCAGTAC 925 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | || || |||| || | ||||||| | ||||||||| ||| Sbjct 924 TCAAGTCTGCCCGTATCGCCTGCAAGCCAGCAGTTGAGCTGCTGGTTTTCACAAACGACG 865 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||| |||| ||| |||||| ||||||||| |||||| Sbjct 864 CGACAAACCGCCTACGAACTCTTTACGCCCAGTAATTCCGGACAACGCTTGCACCCTACG 805 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||| |||||||||||||||| |||| ||| |||||| Sbjct 804 TATTA---------NNGGCACGTAGTTAGCCGGTGCTTCTTCTGCAGGTA 764 >seq1400 Length=5517 Score = 190 bits (210), Expect = 3e-46 Identities = 223/295 (76%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| | || || || | |||||||| | ||||| Sbjct 1082 CCCACGCTTTCGTGCCTCAGCGTCAATAACACCATAGTAAGCTGCCTTCGCAATCGGTGT 1023 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACA---CACGGAATTCCGATTGCCTCTCCAG 117 || ||||||| ||||||||||||||| ||| |||||| | ||||| | Sbjct 1022 TCTGTGACATATCTATGCATTTCACCGCTACTTGTCAC---ATTCCGCCTACCTCTAGTG 966 Query 118 CACTCAAGAAAAACAGTTTCAAATGCAG-GCTATGGGTTGAGCCCATAGT-TTTCACATC 175 | ||||| | |||| |||| ||| || |||| ||||||| | || |||||| | Sbjct 965 TATTCAAGCTCATCAGTATCAAGGGCACTGCGATGG-TTGAGCC-ACCGTCTTTCACCCC 908 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 |||||| |||||||| | ||||||| ||||||||||||||||||||||||| | Sbjct 907 TGACTTAATAAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGGATC 848 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || |||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 847 CTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTA 793 >seq2 Length=66720 Score = 91.5 bits (100), Expect = 2e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGC 249 ||||||| |||||||| |||||| | || |||| |||||| ||| ||| ||||||| Sbjct 47643 GCCTACATACCCTTTACGCCCAATCCTTACGAATAATACTTGCCCCCTCCGTTTTACCGC 47584 Query 250 GGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||| | ||||||| ||||| ||| Sbjct 47583 GGCTGCTGGCACGAAATTAGCCGGGGCTTCTTC 47551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828687553855