Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq158 167 2e-39 seq3 140 2e-31 seq1400 111 1e-22 seq2 86.0 4e-15 >seq158 Length=3153 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 728 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 787 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 788 CTTTCGTACCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 847 Query 121 CACTACGATTTCCGACCGTA 140 || ||||| |||||||||| Sbjct 848 CAACACGATGTCCGACCGTA 867 >seq3 Length=3814 Score = 140 bits (154), Expect = 2e-31 Identities = 116/139 (83%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 3036 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 2977 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || ||| | Sbjct 2976 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT 2917 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 2916 -ACGACCGATTTCCGACCG 2899 >seq1400 Length=5517 Score = 111 bits (122), Expect = 1e-22 Identities = 113/142 (80%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 4824 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGT 4765 Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT- 118 |||||| |||||| |||| ||| ||| || ||||||| ||| ||| |||||||| Sbjct 4764 CTTTCGACCCTGCTCGGCTTGTCTGC-CTCACAGTCAAGCAAGCTTATGCTATTGCACTC 4706 Query 119 ATCACTACGATTTCCGACCGTA 140 ||| |||| || || | |||| Sbjct 4705 CTCA-TACGGTTACCAAGCGTA 4685 >seq2 Length=66720 Score = 86.0 bits (94), Expect = 4e-15 Identities = 93/120 (78%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCC--ACCGGATCACTATGACC 58 ||||||||||||||| |||||| || ||||| || ||| | ||||||||||||||| Sbjct 65187 TACCTTTTATCCGTT-AGCGATAACCTTTCCA--CACAGCATTATCGGATCACTATGACC 65131 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||| || | |||| ||| || ||||||| ||||||||||| |||| Sbjct 65130 GACTTTCGTCTCTGTTCGATTTGTATATCTTACAGTCAAGCAAGCTTTTGCCATTACACT 65071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351953783500