Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq158 187 2e-45 seq3 150 2e-34 seq1400 120 3e-25 >seq158 Length=3153 Score = 187 bits (206), Expect = 2e-45 Identities = 135/156 (87%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 740 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 799 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| | ||||||||| Sbjct 800 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCAACACGATGTC 859 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 860 CGACCGTATCTAGCGTACCTTCGAACTCCTCCGTTA 895 >seq3 Length=3814 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 3024 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 2965 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||| |||| || ||| | |||| || Sbjct 2964 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTC 2905 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| ||||||||||| Sbjct 2904 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 2869 >seq1400 Length=5517 Score = 120 bits (132), Expect = 3e-25 Identities = 122/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||| Sbjct 4811 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGC 4752 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATGT 142 ||| ||| ||| ||||||||| ||||||||| |||||||| |||| ||| | Sbjct 4751 TCGGCTTGTCTGCCTCACAGTCAAGCAAGCTTATGCTATTGCACT--CCTCATACGGTTA 4694 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | ||| | |||| ||||| | ||||||||| Sbjct 4693 CCAAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTA 4657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473535745060