Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1400 316 3e-84 seq158 271 1e-70 seq3 271 1e-70 seq1401 150 3e-34 seq2 100 4e-19 seq7047 82.4 1e-13 >seq1400 Length=5517 Score = 316 bits (350), Expect = 3e-84 Identities = 229/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 5150 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 5091 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 5090 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 5031 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 5030 CCCCACTCAAAATTCCTACGCCCACAACAGATAGGGACCGAACTGTCTCGCGACGTTCTG 4971 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||| Sbjct 4970 AACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 4911 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 4910 CCCAGGATGTGACGAGCCGACATCG 4886 >seq158 Length=3153 Score = 271 bits (300), Expect = 1e-70 Identities = 216/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| ||||||||| ||| || |||| |||| Sbjct 407 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGCAATGCCACTGGCG 466 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| || Sbjct 467 TGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 526 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||| ||||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 527 TTCAAATTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 586 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 587 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 646 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 647 GATGTGATGAGCCGACATCG 666 >seq3 Length=3814 Score = 271 bits (300), Expect = 1e-70 Identities = 216/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| |||| Sbjct 3357 GCTTAGATGCTTTCAGCGGTTATCTATTCCGAACATAGCTACCCGGCAATGCCACTGGCG 3298 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 3297 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 3238 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct 3237 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 3178 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||||||| || |||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 3177 AGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTTCAGCCCCAG 3118 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 3117 GATGTGATGAGCCGACATCG 3098 >seq1401 Length=5644 Score = 150 bits (166), Expect = 3e-34 Identities = 89/93 (96%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4976 ACGTTCTAAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 4917 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| ||||||||||||||| Sbjct 4916 ACTCCAGCCCCAGGATGCGACGAGCCGACATCG 4884 >seq2 Length=66720 Score = 100 bits (110), Expect = 4e-19 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 ||||| |||||| ||| || |||||||||||||||| | |||| ||||| |||| | Sbjct 126 CACCATAGGTTTATCCTTCTCGGTCCTCTCGTACTAGAGTCAGCAT-TCTCATATTTTTT 68 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 | || |||||||||||||||||||| ||||||||| |||||||||| ||| || Sbjct 67 ATATA-ACAGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACC 9 Query 208 TCTTTAA 214 |||||| Sbjct 8 ACTTTAA 2 >seq7047 Length=202 Score = 82.4 bits (90), Expect = 1e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| ||||| | |||||| || || ||| | Sbjct 93 TTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCAT 152 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||||| ||||| | |||||| | | ||||| |||||||||||||| Sbjct 153 TGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780694066180