Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002002.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq58 246 3e-63 seq175 91.5 2e-16 >seq58 Length=338205 Score = 246 bits (272), Expect = 3e-63 Identities = 159/173 (92%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 |||| |||||||||||| || |||||||||||||||||||||| ||||||||| | ||| Sbjct 262378 TGCTCACCAACATCGCCGGCTTGATGGACAAGGAAGGCAAGGTCTTGACCGGCCT-GACG 262436 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262437 ACCCAGCAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 262496 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173 ||||| ||||| |||||||| |||||||||||||| ||||||||| ||||||| Sbjct 262497 ATCCGCTGCGCGCTGGAAGCGGTGCAAGGCGGCGTTGGCAGCTCGTTGATCCT 262549 >seq175 Length=248288 Score = 91.5 bits (100), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 5/125 (4%) Strand=Plus/Minus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGAC- 59 || |||||||||||||| || | ||||||| | ||||| || |||||| | | | | Sbjct 138772 TGATGACCAACATCGCCGGCGTCCAGGACAAGCAGGGCAACCTGGTGACCGACCT-GTCG 138714 Query 60 -CACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGA 118 ||||| | | | ||||| || ||||||||||||| |||| |||||||||||||||| Sbjct 138713 GCACGCGAAA--TCGACGAGATGTTCGCCGACGGCACGATCTCGGGCGGCATGCTGCCGA 138656 Query 119 AGATC 123 ||||| Sbjct 138655 AGATC 138651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534327496115