Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq339 378 1e-102 seq2538 188 1e-45 seq1636 159 6e-37 >seq339 Length=192476 Score = 378 bits (418), Expect = 1e-102 Identities = 255/284 (90%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 |||||| |||||||||||||||||||||| |||||||| || |||| | | || ||||| Sbjct 150697 TACGCCCTGCGGCCGCTGGATTTCGCGGTATTCCCGACC-ATCCTGCTGATCGCCACCCT 150755 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| || ||||| | ||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 150756 GCTGCGGCTGGCGCTTAACGTGGCTTCCACCCGGGTGGTGATGCTCCACGGCCAGGACGG 150815 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180 ||| ||||| || || ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 150816 CCACGCCGCCGCGGGCAAGGTGATCCAGGCCTTTGGCGAGGTGGTGATCGGCGGTAACTA 150875 Query 181 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAA 240 |||||||||||||||||| || |||||| |||||||||||||||| ||||| |||||||| Sbjct 150876 CGTGGTCGGTATCGTGGTTTTTGCGATCTTGATGATCATCAACTTCGTGGTCGTGACCAA 150935 Query 241 GGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 150936 GGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGTTTTACCCTCG 150979 >seq2538 Length=15200 Score = 188 bits (208), Expect = 1e-45 Identities = 207/274 (76%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTC 68 ||||||||| |||||| | || ||||||||| | | | || | ||| |||| | | Sbjct 6243 GCGGCCGCTCGATTTCTCCGTCTTCCCGACGG-TGATCCTGGCCACCACCATGCTCAGGC 6301 Query 69 TGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCG 128 || | | ||||| ||||||||||| |||||| |||| || ||||| ||| | | Sbjct 6302 TGACCCTCAACGTGGCCTCCACGCGCGTGGTGCTGCTGCATGGCCACACGGGCGCGGATG 6361 Query 129 CTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCG 188 | |||||||| || ||| |||||||||| | |||||||| ||||| || | ||| |||| Sbjct 6362 CGGCCGGTAAAGTCATCGAGGCCTTCGGCAACGTGGTGATTGGCGGCAATTTCGTCGTCG 6421 Query 189 GTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCG 248 | ||||| || |||| |||| |||||||||||||||| | || || ||||||||||||| Sbjct 6422 GCATCGTCGTCTTCGTGATCTTGATGATCATCAACTTCGCCGTCGTCACCAAGGGCGCCG 6481 Query 249 GGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 ||| || || || ||| |||||| || ||||| Sbjct 6482 AGCGCATCTCGGAAGTGTCCGCGCGCTTCACCCT 6515 >seq1636 Length=29650 Score = 159 bits (176), Expect = 6e-37 Identities = 195/265 (74%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 |||||| || ||| || |||||||| ||| ||| || ||||| |||| || ||| Sbjct 17430 GCCGCTCGACTTCATGGCCTTCCCGACC-ATTTTGCTCGTCTCGACCATGCTGCGCCTGT 17488 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | ||||||| || |||||||| |||||| || | ||||| ||| | ||| | Sbjct 17489 CGCTGAACGTGGCGTCCACGCGCGTGGTGCTGACGGAAGGCCATACGGGCGCCGACGCGG 17548 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 ||||||| |||||| |||||||||| | | |||| ||||| |||||| |||||||| Sbjct 17549 CCGGTAAAGTGATCGAGGCCTTCGGCCACTTCTTGATTGGCGGCAACTACACGGTCGGTA 17608 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 |||| |||||| || ||| ||||||||||| |||||| |||||||| || || | Sbjct 17609 TCGTCGTGTTCATCATTTTGACCATCATCAACTTCACGGTGGTCACCAAGGGTGCGGGCC 17668 Query 252 GGATTTCCGAGGTGAGCGCGCGGTT 276 | || |||||||| |||| || || Sbjct 17669 GTATCGCCGAGGTGGGCGCCCGCTT 17693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809490158785