Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq174 455 5e-126 seq11129 86.0 1e-14 >seq174 Length=35339 Score = 455 bits (504), Expect = 5e-126 Identities = 278/294 (95%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 ||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 2563 TCGAGCAACGCCAATAGACCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 2622 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2623 AGTGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 2681 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2682 TCCACGTTACCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCGAGCAGCTTG 2741 Query 181 CGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTG 240 ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2742 CGCTTACGGCTGACGTCGCCGCCATAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTG 2801 Query 241 ACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 2802 ACGGAAGTCCGTGCAATGATCTGCCCGCCGATGGCGGCCTGGATCGCGACGTCG 2855 >seq11129 Length=606 Score = 86.0 bits (94), Expect = 1e-14 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 172 AGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTG 231 |||||||||||||||||||| | ||| ||||||||||| ||||| || |||| ||| | | Sbjct 1 AGCAGCTTGCGCTTACGGCTGATGTCGCCGCCGTAGCACTTGGCGAGAACGTCCTTGCGG 60 Query 232 AGAGCCTTGACGGAGGTC-CGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 290 | | | || | || |||| ||||||| | |||| || ||||||||||||| || Sbjct 61 ATTG-CGCGAATGTTCTCGCGCGAGATGATCTTCGCGCCGATCGCGGCCTGGATCGGAAC 119 Query 291 GTCG 294 ||| Sbjct 120 CTCG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838282582080