Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq280 513 3e-143 seq339 354 2e-95 seq3032 109 1e-21 >seq280 Length=41482 Score = 513 bits (568), Expect = 3e-143 Identities = 343/382 (90%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60 |||| || |||||||||| |||||| ||||| ||||| ||| || ||||| ||||| | Sbjct 23091 CGAGGGCGAAGAAGTGCAGCATGCGCTCGGCGTCCAGTTGCTGATGGCGCTCAAGGTAAC 23150 Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120 |||||||||||||||||||||||| |||||| |||| || ||||| || || ||||||| Sbjct 23151 TGTCCAGGGTGCCGCTGCTGAGCAGCGACATGGCCAACTCGTCCAGCCCGTCACTGCGCC 23210 Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 23211 CGGCCTGGGGCATCAACGACAGCGAATAACTGACTTCCAGCATGCGCGCCAGGTTCTCGG 23270 Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCA 240 | |||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| Sbjct 23271 CACGCTCCAGGTAACGGGACATCCAATACAGATCTGCGGCGGTTCTACTCAGCATACTCA 23330 Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300 |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || Sbjct 23331 GCCCTCCACCACCCAGGTGTCCTTGGTTCCGCCGCCTTGCGACGAGTTGACGATCAATGA 23390 Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360 |||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 23391 GCCTTCGCGCAGTGCCACGCGGGTCAAGCCACCCGGCACCAGGCGGGTTTCCTTGCCCGA 23450 Query 361 GAGCACGAAGGGTCGCAAGTCG 382 ||||||||| ||||||| |||| Sbjct 23451 GAGCACGAACGGTCGCAGGTCG 23472 >seq339 Length=192476 Score = 354 bits (392), Expect = 2e-95 Identities = 308/381 (81%), Gaps = 1/381 (0%) Strand=Plus/Minus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||||||||| | ||| ||| ||||| |||| | Sbjct 81977 AGGGCGAAGAAGTGCAGCAGGCGTTCGGCGTGCAGTTCACCGTGGCGCTCGCGGTAATCG 81918 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 || ||||||||| || | |||| || |||||||||||||| ||||||||||| ||||||| Sbjct 81917 TCGAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCATGCAGGCCATCGCCGCGCCCG 81858 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| |||||||||||| || ||||| || || ||||| || ||| Sbjct 81857 TCCTGGGGCATCAGCGACAGCGAATAACTGACATCGAGCATCCGCGCGAGGTTTTCCGCG 81798 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATA-CTCAG 241 ||||||||||| |||||||||||||||| ||| | || ||||||| || |||| ||| Sbjct 81797 CGCTCCAGGTAGCGCGACATCCAATACAAATCCGAGGCAGTTCTACTCAACATATTTCAA 81738 Query 242 CCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAG 301 |||| |||||||||||||| || || || ||||| || ||||||||||| ||||||||| Sbjct 81737 TCCTCGACCACCCAGGTGTCTTTAGTGCCGCCGCCCTGGGACGAGTTGACCACCAGCGAG 81678 Query 302 CCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAG 361 |||||| ||||||||| || |||| ||| |||||||||| |||||||||||||| Sbjct 81677 CCTTCCCGCAGCGCCACACGAGTCAGGCCGCCGGGCACCACACGGGTTTCCTTGCCTTGC 81618 Query 362 AGCACGAAGGGTCGCAAGTCG 382 ||||| || || |||| |||| Sbjct 81617 AGCACAAACGGGCGCAGGTCG 81597 >seq3032 Length=8793 Score = 109 bits (120), Expect = 1e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 245 TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCT 304 |||| |||||| ||||||||||| || || || ||||| || ||||| |||||||||||| Sbjct 5405 TCCAGCACCCACGTGTCCTTGGTGCCGCCCCCCTGCGAAGAATTGACCACCAGCGAGCCT 5464 Query 305 TCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGC 364 || ||| ||||||||||||| ||| || || |||| | | |||||| || ||| Sbjct 5465 TCGCCCAGGGCCACGCGGGTCAGGCCGCCCGGTACCATGGAAATGGTCTTGCCGGACAGC 5524 Query 365 ACGAAGGGTCGCA 377 ||||| || |||| Sbjct 5525 ACGAACGGACGCA 5537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1119843144000