Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq216 477 2e-132 seq1368 358 2e-96 seq1401 235 1e-59 seq1400 224 2e-56 seq2 109 1e-21 seq10072 89.7 1e-15 >seq216 Length=1692 Score = 477 bits (528), Expect = 2e-132 Identities = 359/415 (87%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |||| Sbjct 672 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 613 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 553 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| Sbjct 552 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCC 493 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || || ||||| ||||| | |||||||||||||||| || Sbjct 492 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 433 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | |||| |||||||||||||| |||||||| | |||||||||| | | | Sbjct 432 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCCCACTACC 374 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||| || ||||||||||||||||||| ||| ||| || |||||||| || Sbjct 373 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 317 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 --CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 265 >seq1368 Length=2069 Score = 358 bits (396), Expect = 2e-96 Identities = 330/413 (80%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||||| Sbjct 1633 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGCTTTCGCCCAT 1692 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1693 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 1752 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| ||||| |||| ||| ||| |||||| || Sbjct 1753 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCTTTTACCCTACC 1812 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||| || |||| | | |||||| |||| Sbjct 1813 AACTAGCTAATCAGATATCGGCCGCTCCACGAGCATGAGGTCTTGCGATCCCCCACTTTC 1872 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC--CTCCATCAG 301 || || |||||||||||||| |||| ||||||||| ||||| | Sbjct 1873 ATCCGTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCCA--GG 1930 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361 | | |||| | | ||||||||||||| ||||||||| || | || |||||||| | | Sbjct 1931 GTACGTTCCGATATATTACTCACCCGTTCGCCACTCGCCACC--AG-AGCAAGCTCCGTG 1987 Query 362 CTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1988 CTG---CCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 2037 >seq1401 Length=5644 Score = 235 bits (260), Expect = 1e-59 Identities = 166/190 (87%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 730 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTTCGCCCATT 671 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 670 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 611 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| | |||| ||||||||| ||| |||||||||||| ||| Sbjct 610 GGCCGGTCACCCTCTCAGGTCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCACCA 551 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 550 ACAAGCTGAT 541 >seq1400 Length=5517 Score = 224 bits (248), Expect = 2e-56 Identities = 307/423 (73%), Gaps = 28/423 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||| |||| ||| || ||||| | ||||||||||||||| |||| || | |||| Sbjct 745 TTTACGACCCAGAGGGCTGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTCCCTCCAT 686 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 685 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 626 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| ||||||||||||||| | |||| |||||||||| |||||||| |||||||||| Sbjct 625 TGGGGGGTCATCCTCTCAGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCC 566 Query 184 AACTAGCTAAT----------CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-T 232 ||||||||||| |||||| || |||| ||| | | | || | Sbjct 565 AACTAGCTAATGACACGCATGCCCATC----TTAATCCTATAAATATTTGAACATTGGAT 510 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 || || || | ||||||||| ||| | |||| || ||||||| Sbjct 509 AATGCT-----ATCCTGTGTTTTTATGCGGTCTTAATCCGAATTTCTTCGGGCTATCCCC 455 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 || | ||| | ||| | | | |||| ||||||| ||||||| ||| ||| ||| Sbjct 454 CTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCCACT-TTCA--TAAGAAGC 398 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||| ||| | | |||||||||||||||| ||||||||||||| |||||||| || Sbjct 397 AAGCCTCTTAATCT---CGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCT 341 Query 412 GAG 414 ||| Sbjct 340 GAG 338 >seq2 Length=66720 Score = 109 bits (120), Expect = 1e-21 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 22 TTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACT 81 |||||| |||| | ||| |||| |||| |||||||| |||||| |||||||||||||| Sbjct 47502 TTCTTCCCTCACGTGACATTGCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCCCACT 47443 Query 82 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCA 141 |||| || | | ||| || | | | ||| | || |||||||| |||||||| || Sbjct 47442 GCTG--TCTCTGACGAGATTGACCTTTTTTTCAATGTCAATGTGGCTGATCATCCTCCCA 47385 Query 142 GACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 ||||| ||| | ||| ||| || | | ||| |||||| ||||||| Sbjct 47384 GACCAACTACGAATCCTCGGCTTGTTAGGCTTTTACCCTTCCAACTA 47338 >seq10072 Length=304 Score = 89.7 bits (98), Expect = 1e-15 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| || || |||| ||| ||| || ||||| ||||||||| ||||||||||| Sbjct 300 CACGTGGTATCGCTGGATCTAACTTACGTTAATTGTCCAATATTCCTCACTGCTGCCT-- 243 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 | | |||| ||| | | | ||| ||||| ||||| || ||||| || ||||||| ||| Sbjct 242 CTTTCGAGTTTGGCCTTTTTTTCAATTCCAATGTGGATGATCATCTTCCCAGACCACCTA 183 Query 151 GGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | ||| ||| || | | | |||||||| |||||| Sbjct 182 CGAATCTTCGGCTTGATAAGACATTACCCTATCAACTA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222228802880