Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1401 399 7e-109 seq1368 365 1e-98 seq216 293 7e-77 seq1400 223 1e-55 seq4315 197 4e-48 seq2 196 1e-47 seq10072 87.8 5e-15 >seq1401 Length=5644 Score = 399 bits (442), Expect = 7e-109 Identities = 377/479 (79%), Gaps = 22/479 (5%) Strand=Plus/Plus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 |||||||| ||||||||||||| ||||||| | |||||||| || |||||| Sbjct 396 GAGCGGCGAACGGGTGAGTAACACGTGGGTGATCTGCCCTGCACTTCGGGATAAGCCTGG 455 Query 82 GAAA---GGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGC 138 |||| ||| ||||||| |||| | || ||||||||||| | | |||| Sbjct 456 GAAACTGGGT---CTAATACCGGATATGAC-CTCCTATCGCATGGTGGGTGGTGGAAAGA 511 Query 139 TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198 | |||| |||||| | |||||| | || |||| |||||| ||||| ||| ||||| Sbjct 512 TTTATCGGTGCAGGATGGGCCCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCA 571 Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258 ||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||| Sbjct 572 AGGCGACGACGGGTAGCCGACCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGC 631 Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 632 CCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCA 691 Query 319 GCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-- 376 || |||||||||||| ||||| ||||||||||| ||||| |||| || || ||| || Sbjct 692 GCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAG 751 Query 377 ---TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA 433 | ||||||||| || || ||||| |||||||||||||||| | ||| Sbjct 752 CGCAAGTGACGGTACCTGCAGAAGAAGCACCGGCTAACTACGTGC---------CNNTAA 802 Query 434 TACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 ||||||||| || |||||| |||||||||||| |||||||||| || |||||| ||||| Sbjct 803 TACGTAGGGTGCAAGCGTTGTCCGGAATTACT-GGGCGTAAAGAGTTCGTAGGCGGTTT 860 >seq1368 Length=2069 Score = 365 bits (404), Expect = 1e-98 Identities = 295/362 (81%), Gaps = 26/362 (7%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||||||||||||||||||| ||||| || ||||||||| ||||||||||| | |||| Sbjct 1827 TCTGATTAGCTAGTTGGTAGGGTAAAAGCCTACCAAGGCATCGATCAGTAGCTGGTCTGA 1768 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1767 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 1708 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| ||||||||| |||||||||| |||||| |||||||||| || |||||| Sbjct 1707 GGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 1648 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378 |||||||| |||||||||| | ||| |||||| || Sbjct 1647 CTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGAAACGGTGAGGGCTAATATCCCTTGCTA 1588 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 1587 ATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 1528 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 |||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||| |||| Sbjct 1527 AGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAG 1469 Query 499 TC 500 || Sbjct 1468 TC 1467 >seq216 Length=1692 Score = 293 bits (324), Expect = 7e-77 Identities = 281/362 (78%), Gaps = 26/362 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| |||| ||||||||||||||| ||| | | ||| Sbjct 474 GTCGGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 533 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 534 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 593 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 594 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 653 Query 343 CCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA--------- 378 |||||| | ||||||| || | |||||| ||| Sbjct 654 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTAAATTAATACTTTGCTGT 713 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||| Sbjct 714 TTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 773 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| | |||||||||||| |||| Sbjct 774 GAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTCGTTAA 832 Query 498 GT 499 || Sbjct 833 GT 834 >seq1400 Length=5517 Score = 223 bits (246), Expect = 1e-55 Identities = 265/360 (74%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| | ||||||||||||| ||||||||| |||||||||||||| | ||| || | Sbjct 548 GCGTGTCATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGACTAGGGGATC 607 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| | ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 608 TGAGAGGATGACCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 667 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA- 339 ||| ||||||||| |||||| || |||| |||| | |||||||| || || Sbjct 668 AGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTGCAGGAAGAC 727 Query 340 AGGCCTTCGGGTCGTAAA--GCT-----------------CTGTCCTCAAGGAAGATAAT 380 || ||| |||||||||| ||| || || | | | || | Sbjct 728 AGCCCTCTGGGTCGTAAACTGCTTTTATTCGGGAATAAACCTTTCTACGTGTAGGAAGCT 787 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 || |||| |||| ||| ||||||||| |||||||||||||||||||||||| || Sbjct 788 GAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 847 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | ||||||||||||| ||| | ||| ||||||||||||||| || || ||||||| Sbjct 848 GATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTC 906 >seq4315 Length=368 Score = 197 bits (218), Expect = 4e-48 Identities = 159/191 (83%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 310 CCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCA 369 |||||| |||| | |||||||||| |||||||||| | |||| |||||||||| || | Sbjct 1 CCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACCG 60 Query 370 AGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 |||||||||||||||| | || |||||||||||||||| |||||||||||||||| Sbjct 61 GTGAAGATAATGACGGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCG 120 Query 430 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| |||||||||||||| | |||| ||||| |||||||||| | |||||| || Sbjct 121 GTAATACGAAGGGGGCTAGCGTTGTTCGGATTTACT-GGGCGTAAAGCGCACGTAGGCGG 179 Query 490 TTTCTTAAGTC 500 | ||||||| Sbjct 180 ACTATTAAGTC 190 >seq2 Length=66720 Score = 196 bits (216), Expect = 1e-47 Identities = 237/319 (74%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 ||||||| | ||||| || || |||| ||| ||| |||| | ||| |||| ||||| Sbjct 47338 TAGTTGGAAGGGTAAAAGCCTAACAAGCCGAGGATTCGTAGTTGGTCTGGGAGGATGATC 47397 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||||||||| | ||| | | | ||| ||| | | || ||||||||||||||||| Sbjct 47398 AGCCACATTGACATTGAAAAAAAGGTCAATCTCGTCAGAGA--CAGCAGTGGGGAATATT 47455 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCG 353 | |||||| || |||| |||| |||||| | | |||||| || ||| | | | | Sbjct 47456 GGACAATGAGCGCAAGCTTGATCCAGCAATGTCACGTGAGGGAAGAAA----TAGAAT-G 47510 Query 354 TAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTA 413 |||| |||| | | ||||||||||||||| | || | || |||||||||||||| | Sbjct 47511 TAAACCTCTTTTATTAAGGAAGATAATGACAAGAATTAAAGAAGAAGCCCCGGCTAATTT 47570 Query 414 CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTA 473 |||||||||||||||||||| ||| ||||||| || |||| || || | | ||||||| Sbjct 47571 CGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGTATTATTCGTAAGGA-TTGGGCGTA 47629 Query 474 AAGGGTGCGTAGGTGGTTT 492 |||||| ||||| |||| Sbjct 47630 AAGGGTATGTAGGCTGTTT 47648 >seq10072 Length=304 Score = 87.8 bits (96), Expect = 5e-15 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||| || ||||| | |||| |||| ||| ||| |||| | ||| || | ||||| Sbjct 145 TAGTTGATAGGGTAATGTCTTATCAAGCCGAAGATTCGTAGGTGGTCTGGGAAGATGATC 204 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||||||||||| ||| | | | |||||||| | |||||||||||| |||||||| Sbjct 205 ATCCACATTGGAATTGAAAAAAAGGCCAAACTCGAA--AGAGGCAGCAGTGAGGAATATT 262 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAG 333 | ||||| | ||| ||| |||| | || |||||| Sbjct 263 GGACAATTAACGTAAGTTAGATCCAGCGATACCACGTGAG 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497390261120