Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq216 372 7e-101 seq1368 361 1e-97 seq4315 300 4e-79 seq1400 298 1e-78 seq1401 253 5e-65 seq2 100 7e-19 >seq216 Length=1692 Score = 372 bits (412), Expect = 7e-101 Identities = 321/396 (81%), Gaps = 1/396 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 734 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 793 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | |||||||||||| |||||| || |||||| | || Sbjct 794 GAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCCCCGGG 853 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| || |||||| | |||||||| | || || ||||||| Sbjct 854 CTCAACCTGGGAACTGCATTCAAAACTGACGAGCTAGAGTATGGTAGAGGGTGGTGGAAT 913 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 914 TTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGGCGACCA 973 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 974 CCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1033 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||||||| ||||| || ||| | | || || ||| Sbjct 1034 TGGTAGTCCACGCCGTAAACGATGTCAACTAGCCGTTGGGAGCCTTGAGCTCT-TAGTGG 1092 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| |||||| ||||| || ||||||||||| Sbjct 1093 CGCAGCTAACGCATTAAGTTGACCGCCTGGGGAGTA 1128 >seq1368 Length=2069 Score = 361 bits (400), Expect = 1e-97 Identities = 328/411 (80%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1580 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 1521 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||| ||||| ||| ||||| |||||| || || Sbjct 1520 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGTCTGATGT 1461 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT---GCAGG 177 |||| | ||||||||| || | ||| || || |||||| ||||||| | |||| Sbjct 1460 GAAATCCCCGGGCTCAACCTGGGAATTGCATTGGAGACTGCAAGGCTAGAATCTGGCAGA 1401 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 |||| || ||||||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 1400 GGGGG---GTAGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCGA 1344 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||||| || |||| | |||| || | || ||||||||||||||||||| Sbjct 1343 TGGCGAAGGCAGCCCCCTGGGTCAAGATTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 1284 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCA 357 ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| | Sbjct 1283 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCTACTAGTTGTCGGG--TCT 1226 Query 358 TAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || ||| |||||| ||||| ||||| || ||||||||||| Sbjct 1225 TAATTGACTTGGTAACGCAGCTAACGCGTGAAGTAGACCGCCTGGGGAGTA 1175 >seq4315 Length=368 Score = 300 bits (332), Expect = 4e-79 Identities = 237/284 (83%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 85 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 144 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||| ||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 145 TTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGACTATTAAGTCAGGGGTGAAATCCC 204 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||||||| ||||| ||||| |||| | || |||| | ||| || |||| Sbjct 205 GGGGCTCAACCCCGGAACTGCCTTTGATACTGGTAGTCTTGAGTTCGAGAGAGGTGAGTG 264 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 265 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 324 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGA 292 ||| |||| | |||||| |||||| |||||||||||||| Sbjct 325 GCTCACTGGCTCGATACTGACGCTGAGGTGCGAAAGCGTGGGGA 368 >seq1400 Length=5517 Score = 298 bits (330), Expect = 1e-78 Identities = 304/394 (77%), Gaps = 12/394 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 811 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA 870 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||||||||||||| || || ||||||||| |||||||| | ||||||||| Sbjct 871 TTGGGTTTAAAGGGTGCGTAGGCGGCTTATTAAGTCAGGGGTGAAAGACGGTGGCTCAAC 930 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | | ||| |||| |||| | ||| || | || || || | | ||||| Sbjct 931 CATCGCAGTGCCCTTGATACTGATGAGCTTGAATACACTAGAGGTAGGCGGAATGTGACA 990 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 ||||||||||||||| ||||||| ||||||| | |||||||| |||| || Sbjct 991 AGTAGCGGTGAAATGCATAGATATGTCACAGAACACCGATTGCGAAGGCAGCTTACTATG 1050 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 ||| | |||| ||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1051 GTGTTATTGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAG 1110 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC- 375 |||||||| ||||||||||||||| | ||| | | ||| | | || || || Sbjct 1111 TCCACGCCCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCT 1162 Query 376 -AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||||||||||||||||||||| Sbjct 1163 AAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTA 1196 >seq1401 Length=5644 Score = 253 bits (280), Expect = 5e-65 Identities = 245/317 (77%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| || || ||||| ||||||||||||||||| |||||||||||| || Sbjct 764 TACCTGCAGAAGAAGCACCGGCTAACTACGTGCCNN---------TAATACGTAGGGTGC 814 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||||||||||||||||| || |||||| ||||| | ||| || Sbjct 815 AAGCGTTGTCCGGAATTACTGGGCGTAAAGAGTTCGTAGGCGGTTTGTCGCGTCGTTTGT 874 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | ||||||| | || ||| || || | | || |||| | | ||| Sbjct 875 GAAAACCAGCAGCTCAACTGCTGGCTTGCAGGCGATACGGGCAGACTTGAGTACTGCAGG 934 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||||||| |||||||||||||||||| |||||| |||||||||||| |||| Sbjct 935 GGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGG 994 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||||| | |||| | ||||||||| |||||| |||||||||||| ||| ||||| Sbjct 995 CGAAGGCGGGTCTCTGGGCAGTAACTGACGCTGAGGAACGAAAGCGTGGGTAGCGAACAG 1054 Query 301 GATTAGATACCCTGGTA 317 ||||||||||||||||| Sbjct 1055 GATTAGATACCCTGGTA 1071 >seq2 Length=66720 Score = 100 bits (110), Expect = 7e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||| | |||||||||||||||||||| ||| ||||||| || ||| Sbjct 47551 GAAGAAGCCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAAAACGGAGGGGGCAAGTATTA 47610 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT 106 | || || | |||||||||||||| ||||| |||| Sbjct 47611 TTCGTAAGGATTGGGCGTAAAGGGTATGTAGGCTGTTT 47648 Score = 87.8 bits (96), Expect = 4e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||| |||||| ||||||| | ||||||||||||||||||| |||||||||||| | Sbjct 47807 ACTGACGCTGAGGTACGAAAGCATAGGGAGCAAACAGGATTAGAGACCCTGGTAGTCTAT 47866 Query 324 GCCGTAAACGATG 336 || |||||| ||| Sbjct 47867 GCAGTAAACTATG 47879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203031491840