Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq158 590 2e-166 seq1400 430 4e-118 seq3 379 7e-103 seq1401 286 1e-74 seq2584 114 4e-23 >seq158 Length=3153 Score = 590 bits (654), Expect = 2e-166 Identities = 431/495 (87%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 2508 TCGAGTCCGAATAGGGCGATCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACTCA 2449 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2448 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 2389 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2388 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 2329 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2328 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 2269 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 2268 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATACCGATGAGTGCGAG 2209 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | ||||| || ||||||||| ||||| | ||||| || || || ||| Sbjct 2208 CTTGGGAGACAGACGTCGGGTGCTAACGTCCGGCGTCAAGAGGGAAACAACCCAGACCGC 2149 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| ||| ||||||| || |||||||| || ||||| |||| Sbjct 2148 CAGCTAAGGTCCC-AAAGATTGGCTAAGTGGAA--AACGAAGTGGGAAGGCTAAAACAGT 2092 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||| Sbjct 2091 CAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGATCGA 2033 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 2032 GTCGTCCTGCGCGGA 2018 >seq1400 Length=5517 Score = 430 bits (476), Expect = 4e-118 Identities = 440/564 (78%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | |||| || |||||| ||||||| ||||||||||||| Sbjct 3051 CGAGTCTGAATAGGGCGTATAGTCAGGGGAGGTAGACGCGAAACCTTGTGATCTACCCAT 3110 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| |||||||||||||||||| ||||||| ||||||| | || |||||||| | Sbjct 3111 GGACAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCGATAAACGTTGAAAAGT 3170 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| |||||||||||||||||||||||| |||||| |||||||||| || ||| Sbjct 3171 TTCCGGATGATCTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCGTACTC 3230 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAG-TATCACCATCGGG-GGTAGAGC-ACTGTTA 237 |||||| | |||||| | || | || || || | |||||||| |||| | Sbjct 3231 CCCGAAATGTTTTTAGGAACAGCGTTGAGGTAAAGTTATTTAGAGGTAGAGCTACTGAT- 3289 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 ||| | |||| | | ||||||| | |||||||||||||| | | | | Sbjct 3290 TGGGTGCGGGGGAGTCAAATCCTACCAAATCCAGACAAACTCCGAATGCTAAATAATATA 3349 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | | ||||||| | ||||||||||||| | |||||||| ||||| || ||| Sbjct 3350 --CTCAGCAGTGAGGCCCGGGGTGCTAAGGTCACGGGCCGAGAGGGAAAGAACCCAGACC 3407 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||||| ||| || | || ||||||| ||||||||| || |||||| ||||| Sbjct 3408 ATCAGCTAAGGTCCCCAAGTTACTACTAAGTTGAACTAACGAGGTGCGATTGCATAGACA 3467 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3468 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 3527 Query 478 GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG-ATCA 536 ||| ||| || |||||||||| |||| ||||||| || |||||||| |||| | | Sbjct 3528 GAGCGATCGTGCATGGATAATAAACGGGCATTAAGTAGTACACCGAAGCTATGGGTAATA 3587 Query 537 TTTATATGATCGGTAGGGGAGCAT 560 || |||| | |||||||||||||| Sbjct 3588 TTAATATTA-CGGTAGGGGAGCAT 3610 >seq3 Length=3814 Score = 379 bits (420), Expect = 7e-103 Identities = 378/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 1233 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 1292 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 1293 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTACCGTTGAAAAGT 1352 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 1353 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 1412 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 1413 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 1472 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 1473 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 1532 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 1533 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 1590 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 |||||||||| ||| || | | | ||||| | ||||| || || ||| ||||| Sbjct 1591 GTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 1648 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 1649 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 1707 Query 478 GAG 480 ||| Sbjct 1708 GAG 1710 >seq1401 Length=5644 Score = 286 bits (316), Expect = 1e-74 Identities = 396/541 (73%), Gaps = 14/541 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||||||| ||||||| ||| || | | |||||||||| | |||||||||||| Sbjct 2883 CGAGTCCGAATAGGGCGATCGTAGTGGCATGCTCTAGACCCGAAGCGGAGTGATCTACCC 2942 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 2943 ATGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAA 3002 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 | |||||||||| |||||||||||||||||||| || |||||| | ||||||||||| Sbjct 3003 CTGAGGGGATGAGTTGTGGGTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGTTC 3062 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTT 236 || |||||| |||||||| || || || | | || ||| |||||||| |||| Sbjct 3063 TCCCCGAAATGCATTTAGGTGCAGCGTCGCGTGTTTCTCACCGGAGGTAGAGCTACTG-G 3121 Query 237 ATGG-CTAGGGGGTCATTGCGACTTACC-AAACCATTGCAAACTCCGAATGCGCATCAGT 294 |||| |||||||| | | |||||| ||| || |||||||||||||| | ||| Sbjct 3122 ATGGTCTAGGGGGCCCACAAG-CTTACCGAAATCA-GCCAAACTCCGAATGCCGGTGAGT 3179 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | ||||| |||||| ||| | |||||| ||| ||||||| || | || | Sbjct 3180 GAGAGCGCGGCAGTGAGACTGCGGGCGATAAGGTTCGTAGTCGAGAGGGAAACAGCCCAG 3239 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | ||||||||| ||| || | |||||| || || || || | | || ||| Sbjct 3240 ATCGCCAGCTAAGGTCCCTAAGCGTGTACTAAGTGGAA--AAGGATGTGGGGTCGCGAAG 3297 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| Sbjct 3298 ACAACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTG 3356 Query 475 GTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 ||| || || ||| || ||| | |||| | |||| | |||||||| | || | Sbjct 3357 GTCAAGTGATCCTGCGCCGACAATGTAGCGGGGCTCAAGTACACCACCGAAGCTGCGGCA 3416 Query 534 T 534 | Sbjct 3417 T 3417 >seq2584 Length=1774 Score = 114 bits (126), Expect = 4e-23 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||||||||||||||||||| ||||| |||| ||||||| |||||||| |||||| Sbjct 1649 GACCCGAAACCAAGTGATCTAGCCATGAGCAGGTTGAAGGTAAGGTAACACTTACTGGAG 1708 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | |||||||| | ||||| || | ||||||| ||||| |||||||||||||| | Sbjct 1709 GACCGAACCCGCATCTGTTGCAATAGATTGGGATGACTTGTGGCTAGGGGTGAAAGGCCA 1768 Query 155 AACAAA 160 | |||| Sbjct 1769 ATCAAA 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689363371520