Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq133 407 5e-111 seq1039 129 2e-27 seq9100 113 1e-22 seq137 102 3e-19 >seq133 Length=18310 Score = 407 bits (450), Expect = 5e-111 Identities = 267/295 (91%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| |||||||||||| || |||| | ||| || |||||||||||||||||| Sbjct 4616 CTCCCACCTATTCTACACCTTTCGGGTCACTATGCAATATCAGACTAGAGTCAAGCTCAA 4675 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| ||| |||||||||| |||||||||||||||| Sbjct 4676 CAGGGTCTTCTTTCCCCGCTGTAAATACCAGGCCCGTTCCCCTGGCTGTGGTTTCGCTGT 4735 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 4736 ATAGTAGTTAGGGACAGTGGGAATCTCATTGATCCATTCATGCGCGTCACTAATTAGATG 4795 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 4796 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGTGCTAGG 4855 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4856 TTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAA 4910 Score = 125 bits (138), Expect = 2e-26 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||||| | |||| || ||| |||||| |||||||| Sbjct 4301 CTTTTGCTCTACGTGAGATTTCTGTTCCCACTGAGCCCGTCTTTGGACACTTGCGTTATT 4360 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 4361 TTTTAACAAATGTGCCGCCCCAGCCAAACTCCCCACCTGAAACTGTC 4407 >seq1039 Length=568 Score = 129 bits (142), Expect = 2e-27 Identities = 124/155 (80%), Gaps = 8/155 (5%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 184 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACAG 125 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||||||||||| | ||| ||| Sbjct 124 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAATGTCATCGATGCGGGTCG 65 Query 128 ---GCCCG-CGA-AGGA---CCTTAACGCCAGAAA 154 ||||| ||| ||| ||||||| ||| ||| Sbjct 64 ACCGCCCGCCGAGCGGACAGCCTTAACACCAAAAA 30 >seq9100 Length=390 Score = 113 bits (124), Expect = 1e-22 Identities = 62/62 (100%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 60 Query 403 TC 404 || Sbjct 61 TC 62 >seq137 Length=72426 Score = 102 bits (112), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 ||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||||| Sbjct 22955 CATAGTTACTCCCTCCGTTTACCCGTGC--GGTTTAATCTCTTCACTTTGACATTCAGAG 22898 Query 505 CACTGGGCAGAAATCACATTGCGTCAA 531 ||| ||| ||||||||||| ||||| Sbjct 22897 TACT--GCAAAAATCACATTGTGTCAA 22873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634970990240