Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1400 307 2e-81 seq1368 179 8e-43 seq1401 174 3e-41 seq216 174 3e-41 seq10072 77.0 7e-12 >seq1400 Length=5517 Score = 307 bits (340), Expect = 2e-81 Identities = 256/313 (82%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | ||||||| || ||| |||||| Sbjct 833 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTCCTACACGT 774 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| | ||||||||| ||||||| ||||||| | || || | || |||| ||||| Sbjct 773 AGAAAGGTTTATTCCCGAATAAAAGCAGTTTACGACCCAGAGGGCTGTCTTCCTGCACGC 714 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||||||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 713 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 654 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| |||||||| | |||||||||| |||||| ||| Sbjct 653 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTCAGATCCCCTAGTCAT 594 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||||||||||||||||||| |||| |||||| |||||| |||||| || Sbjct 593 CGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAATGACACGCATGCCCATCTTAAT 534 Query 301 CCGATGAATCTTT 313 || || ||| ||| Sbjct 533 CCTATAAATATTT 521 >seq1368 Length=2069 Score = 179 bits (198), Expect = 8e-43 Identities = 215/294 (73%), Gaps = 25/294 (9%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTAC---------------ATA 45 ||||||||||||| ||||||||| ||||||||| | |||||| ||| Sbjct 1540 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACCGTCATTAGCAAGGGATA 1599 Query 46 CAAGCTCCCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAAC 105 ||| | ||| ||| || |||||| | |||||| ||||||| ||| || | Sbjct 1600 TTAGCCCTCAC-CGT--------TTCTTCCCTGACAAAAGAGCTTTACAACCCGAAGG-C 1649 Query 106 CTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCAC 165 |||| || |||||| | | ||||| |||| || ||| |||||| |||| ||||| ||| Sbjct 1650 CTTCTTCACTCACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCAC 1709 Query 166 TGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTC 225 ||||||||||||||||||| |||||||||||||||||||| ||||| | | ||||||| Sbjct 1710 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTC 1769 Query 226 AGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | || ||| ||| |||||| || |||| ||||| Sbjct 1770 AGACCAGCTACTGATCGATGCCTTGGTAGGCTTTTACCCTACCAACTAGCTAAT 1823 >seq1401 Length=5644 Score = 174 bits (192), Expect = 3e-41 Identities = 184/241 (76%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 73 TCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGT 132 ||||| | ||||| |||||||| ||| || || |||||| |||||| | | |||| Sbjct 746 TCCCTGCTGAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGCGGCGTCGCTGCA 688 Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 687 TCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 628 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||| ||||| | | |||||||| | ||| || |||| | || ||| Sbjct 627 TGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGTCGGCTACCCGTCGTCGCCTTGGT 568 Query 253 GGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTT 312 |||| ||||||| || || | || || | ||| |||||| | ||||||| |||||| Sbjct 567 AGGCCATTACCCCACCAACAAGCTGATAGGCCGCGGGCCCATCCTGCACCGATAAATCTT 508 Query 313 T 313 | Sbjct 507 T 507 >seq216 Length=1692 Score = 174 bits (192), Expect = 3e-41 Identities = 154/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| |||| Sbjct 668 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCAT 610 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 609 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 550 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 || || | |||||||||| | || ||||| | || |||| ||| ||||||| || Sbjct 549 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 490 Query 269 TACTACCTAAT 279 |||| ||||| Sbjct 489 AACTAGCTAAT 479 >seq10072 Length=304 Score = 77.0 bits (84), Expect = 7e-12 Identities = 107/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || ||| ||| |||| |||||||||||||||||||||| | | |||||| Sbjct 289 GCTGGATCTAACTTACGTTAATTGTCCAATATTCCTCACTGCTGCCT--CTTTCGAGTTT 232 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || | | | ||| ||||||||||| || | || || |||| | |||| ||| | || Sbjct 231 GGCCTTTTTTTCAATTCCAATGTGGATGATCATCTTCCCAGACCACCTACGAATCTTCGG 172 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACC 275 || | | | | |||||| | |||||| Sbjct 171 CTTGATAAGACATTACCCTATCAACTACC 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068650314560