Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2004 374 3e-101 seq133 268 3e-69 >seq2004 Length=1548 Score = 374 bits (414), Expect = 3e-101 Identities = 394/511 (77%), Gaps = 8/511 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAA-AAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||| |||||| || || | | || ||||| | || || ||||| | ||||||||| Sbjct 674 GTACCCATTCCGATAACCGGCCTCATTAAGAGAACGGTCTCGTTATTTCTCGTCACTACC 733 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| | | || || |||||||||||||||||||||||| ||||| || || || ||| | Sbjct 734 TCCTCTTTCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCAT 793 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||| || |||||||| |||||||||||||| ||||||||||| | |||||||| Sbjct 794 TTCTCAGGCCCCTTCTCCGGAGTCGAACCCTAATTCTCCGTTACCCGTCAACACCATGGT 853 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || ||| || |||||||||| | |||||| |||||| | | | |||| | ||||||| Sbjct 854 AGTCCAATACACTACCATCGACAATTGATAAGGCAGATACTCGTATGACACGTCGCCGGT 913 Query 240 TCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 ||| || || |||||| | ||||||||| ||| ||| ||| | | || | || | Sbjct 914 TCATAGACCGTGCGATCAGCTAAGTTATTCTGAGTCAGCAAAACACGACCAAAGCCGCTT 973 Query 299 GTTTTTTATCTAATAAATACACCCCTTCCG--AAGTC-GGGGTTTTTAGCATGTATTAGC 355 | |||| |||||||||| ||| | ||||| | ||| | | ||| |||||||||||| Sbjct 974 GGTTTTGCTCTAATAAATGCACTCTTTCCGCTAGGTCAGAGCTTTAGCGCATGTATTAGC 1033 Query 356 TCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||||| |||||||| ||| | | | ||||| || | ||| ||||| Sbjct 1034 TCTAGAATTACCACAGTTATCCAAGTAACTTGTGTCAAAATCAAGTAGATAATAGCTGAT 1093 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||||||||| ||||| ||||||| || | || | |||||||||||||||||||||||| Sbjct 1094 TTAATGAGCCGTTCGCGGTTTCACGATA-AAATCGTTTATACTTAGACATGCATGGCTTA 1152 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| || || | | | ||||| Sbjct 1153 ATCTTTGAAACAAACACATCAGTTCAGGCAG 1183 >seq133 Length=18310 Score = 268 bits (296), Expect = 3e-69 Identities = 357/481 (74%), Gaps = 35/481 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 9755 TATTTATTGTCACTACTTCCCCGTGTTGGGATTGAGTAATTTGCGCGCCTGCTGCCTTCC 9814 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | || ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 9815 GTAGAAGTGGTCGCCATTTCTCAGGCGCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 9874 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| |||||||||||||| || | |||||||||||||||||||||||| || Sbjct 9875 CCCGTTACAACCATGGTAGGCCAATACCGTACCATCGAAAGTTGATAGGGCAG-----TG 9929 Query 223 A---AT-GAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 | || |||| | | || | || | |||| | | ||||| | || || Sbjct 9930 ACACATAGAAC--TTGTCGAAACTAG---TTTCGATCAGCAATATTATTCGGTTTCGCC- 9983 Query 279 AGGAGCCCCGAAGGGCGTTGGTT----TTTTATCTAAT---AAATACAC-CCCTTCCGAA 330 | | | |||||| | |||||| | | |||| || || | | || | Sbjct 9984 ACAAACTCCGAAGAG-ATTGGTTAGAATGGTTAATAATCGCAAGGACTCACGGTTGCCCG 10042 Query 331 GTCGGGGTT-TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT---GTAGTAA 386 ||| || || | |||||||||| | || |||| ||||||||||| | | ||| Sbjct 10043 CTCGCCTTTCGTTTGTATGTATTAGC-CCCGATTTACTGCGGTTATCCATAACGAATTAA 10101 Query 387 -GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT--ATA 443 | | | || || |||| | ||||||||| | |||||||||| || | | Sbjct 10102 CGCGAAAGTTCTGTAGTTTATCACTGTTATAATGAGCCGTCTGCAGTTTCACCGTACAAA 10161 Query 444 GATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10162 GAT---TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 10218 Query 504 G 504 | Sbjct 10219 G 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510188468480