Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq400 484 2e-132 seq657 123 8e-24 >seq400 Length=38681 Score = 484 bits (536), Expect = 2e-132 Identities = 598/816 (73%), Gaps = 14/816 (2%) Strand=Plus/Plus Query 38635 ACCGATGAAGACACCGAAATCATCTGGTTAGCTTTCGGCAACCCGACGCGTAATACCGGG 38694 || || |||||||| ||||| |||||| | || || || |||||||||||||| |||||| Sbjct 8215 ACGGACGAAGACACGGAAATTATCTGGGTGGCGTTTGGGAACCCGACGCGTAACACCGGG 8274 Query 38695 CGTTTTCGTGAATGCTTCCGGCGTTAC------CGATCGCAGTGGGTCACGCGTCAAATT 38748 || || || ||||||||||| ||| || | | |||| |||| || ||| Sbjct 8275 CGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGCTGGAAGTG-----CGCG-CAGATT 8328 Query 38749 GATAGCCGCAGCGTGGAAGGGATTAACACCGAGCAAATTGCGGCATGGGAAAAGGAATAC 38808 || ||||||| ||||||||| | |||| |||| | | ||||| | || ||| Sbjct 8329 GACAGCCGCACCGTGGAAGGCACAAACAAGCAGCAGCTGCAGAAATGGGTTGACGACTAC 8388 Query 38809 GGCGAGGACAGCGACTTTTTTAAGGTTCGTGTACGCGGTATTTTCCCTGACGCTTCAGAA 38868 ||||| ||||||||||| | ||||| || || || || || ||||||||||| |||||| Sbjct 8389 GGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGATCTTCCCTGACGCGTCAGAA 8448 Query 38869 ATGCAGTTTATTCCTACCGGGTTGACGGAAGAGGCGTTGAAACGCGAGGTGACGGAAAGG 38928 | |||||||| || || || | || || ||||| |||| || | ||| || | || Sbjct 8449 CTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAAGCGGGTGGTTACCGCCGGG 8508 Query 38929 GAGGTCGCGCATGCGCCGGT--TCCTCGGTGTTGACCCGGCGTATTCCGGGGCGGATGAC 38986 |||| || || || || || | |||| || ||||||||||||||||| | |||||| Sbjct 8509 CAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGCGTATTCCGGAGTTGATGAC 8568 Query 38987 GCAGTGATCTATTTGCGGCAGGGGCTTCATTGCAAATTGCTGTGGCGAGGCAGTAAAACC 39046 || ||||| || ||||||||||||| || ||||| |||| ||| |||| || ||| Sbjct 8569 GCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCTCTGGACCGGCAACAAGACC 8628 Query 39047 ACCGACGATCTGATTATGGCAAAACGCGTCGCGGATTTTGAAGACCAGTATCACGCCGAT 39106 ||||||||| |||||||||| || || |||| || |||||||||||||| || || || Sbjct 8629 ACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGAAGACCAGTACCAGGCTGAC 8688 Query 39107 GCGGTGTTTATCGATTTCGGCTACGGCACGGGCCTGAAATCCGTCGCAGGCGGCTGGGGT 39166 |||||||| ||||| ||||| |||||||| || ||||| ||| ||| | ||||||||| Sbjct 8689 GCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTCCATCGGTGACGGCTGGGGC 8748 Query 39167 CGGTCGTGGACACTGGTGCCCTTCGGCGGGGCCTCGAGCGATCTGCAAATGCTCAACAAA 39226 || | ||| || | || |||||||| | ||||| ||||| || ||||| || || Sbjct 8749 AGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGACCGATCCCCAGATGCTAAATAAG 8808 Query 39227 CGCGGAGAAATGTACAACAGCGCGAAAACGTGGCTCAAGGAGGGCGGCGCGCTGGATAGG 39286 |||||||| |||| ||||||| || |||||||| ||| |||||||||||||| Sbjct 8809 CGCGGAGAGATGTTCAACAGCTGCAAGACGTGGCTGAAGCTAGGCGGCGCGCTGGACGAC 8868 Query 39287 CAGGAAACGGCGGAAGATTTGTCGGCCTGTGAGTACAGGGTGCGCGTCGATGGCCGGATT 39346 ||||| ||||| | || |||| || ||||||| || | || || ||| ||| Sbjct 8869 CAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTACAAAGTCAGGGTGGACGGCAAGATC 8928 Query 39347 GTGTTGGAAGACAAGGAGAGCATCAAGGAGCGACTCGGGCGCTCGCCGGGGTGTGGAGAT 39406 || | || ||||| ||||| ||||| | || ||||||||||| || || Sbjct 8929 GTCATTGAGCCGAAGGAAGATATCAAAGAGCGCTTGGGCCGCTCGCCGGGCAAGGGTGAC 8988 Query 39407 GCGTTGGCGCTGACCTTTGCTTTCCCGGTCACGAAG 39442 ||| || |||||| ||||| |||||||| |||||| Sbjct 8989 GCGCTGCTGCTGACGTTTGCCTTCCCGGTTACGAAG 9024 Score = 250 bits (276), Expect = 8e-62 Identities = 896/1376 (65%), Gaps = 39/1376 (3%) Strand=Plus/Plus Query 41359 GGCATGCTTTCGGGGATCACCAGTCCCACGCGCCCGTGGTTTTCTCTGACCACACCAGAC 41418 |||||| | || || || ||||| || | ||||||||||| ||| | || || ||| Sbjct 10793 GGCATGATGTCAGGCATTACCAGCCCGGCCCGCCCGTGGTTCAAGCTGGCGACGCCTGAC 10852 Query 41419 CGGCGACAA-ATGGATAGCTGGCAGGTTAAACGCTGGCTGGCGATGGT-CGTCGATGCCA 41476 | ||||| |||||| | | | ||| ||| |||||||| | || | || || | Sbjct 10853 CC-CGACATGATGGATTACGGCCCGGTGAAAGTCTGGCTGGAAGTCGTGCAGCGCCGC-A 10910 Query 41477 TGAATGACGTGATGAACAAATCGAACTGGTACCAGTCGCTGCCCGTGCTTTACCGCTATC 41536 |||| || ||| | ||||| ||||| ||||||||| || || || | ||| | | Sbjct 10911 TGAACGAAGTGTTCAACAAGTCGAATCTGTACCAGTCACTTCCTGTCATGTACGCCAGCC 10970 Query 41537 TGGGTACCGTGGGAACCGGGGCAATGGCGATACTCGAAGACGATGAGGACGTGATCCGCA 41596 ||||||| | || |||| || ||||| | | ||||| || ||||||||||||||| Sbjct 10971 TGGGTACTTTCGGTACCGCCGCTATGGCCGTGTTAGAAGATGACCAGGACGTGATCCGCA 11030 Query 41597 CCCACGTCTTTCCGG-TCGGCAGTTACTACATCTCCAATAATCACCGTCTTCAG-GTCGA 41654 | | | | |||| ||||||| |||||| | | || | | || | ||| ||||| Sbjct 11031 CA-ATGCCATTCCCTATCGGCAGCTACTACCTGGCGAACAGCCCACG-CGGCAGCGTCGA 11088 Query 41655 TACCGTGTTTCGCCGCTTTTCCATGACCTGCCGCCAGATGAT-CAC-----CTGCTTTGG 41708 ||| || |||| || ||||||||| |||||| || | || | |||| | Sbjct 11089 TACTTCATTCCGCCAGTTCTCCATGACCGTGCGCCAGCTGGTGCAGGAATTCGGCTTGGA 11148 Query 41709 GCGCGAAA--ACGTCAGTCAGGGCGTCGTCAATGCCTGGGACAGTGGTAACGATGAACGC 41766 || || || |||||||||| ||| ||||| | || | |||| || Sbjct 11149 CAACGTAAGCACATCAGTCAGGGGC------ATG--TGGGATAACGGCACGTATGAG-GC 11199 Query 41767 GTAT-TTGAAGTCATACATGCCGTGATGCCCAATACCCGACGCAAAACCGGGCGGCTGGA 41825 | |||| || | || | | | ||| || | | ||| | | ||| | |||| Sbjct 11200 ATGGATTGAGGTAAACCACTGCATCACGCCAAACATCAACCGCGACAGCGGCAAGATGGA 11259 Query 41826 TGCGAAGAACAAGCGCTTTAGCTCGGTCTACTTTGAAACGGCGGGTGATGCCGATCGCCT 41885 |||||||| | | | |||| ||||| || || || | || || |||| || Sbjct 11260 CAGCAAGAACAAACCGTATCGCTCTGTCTATTTCGAGACCGGCGGCGACTCCGACAAGCT 11319 Query 41886 GTTGAGCGAATCCGGCTTTGACGAAATGCCCATACTGGTGCCGCGCTGGGATATCAATGG 41945 | || | |||||||| || || ||| | || || |||| |||||||||||| | || || Sbjct 11320 GCTGCGTGAATCCGGGTTCGATGAATTCCCTATCCTGGCGCCGCGCTGGGAAGTGAACGG 11379 Query 41946 CGAGGATGCGTATGGCTCGTCCTGTCCCGGCATGCTGGCGCTAGGCGGTATCAAGGCCCT 42005 |||||| | || | || ||||| || ||||||||||| || || | |||||||| Sbjct 11380 CGAGGACGTTTACGCATCCTCCTGCCCTGGCATGCTGGCACTCGGTCAGGTTAAGGCCCT 11439 Query 42006 GCAAATCCAGCAGATGCGCAAAGACCAGGCTATCGACAAACTGGTTAATCCGCCGCTGAT 42065 || | |||||| ||| |||| ||| |||||||| || |||||| || | Sbjct 11440 TCAGGTTGAGCAGAAGCGTAAAGCTCAGCTGATCGACAAGGCCACCAACCCGCCGATGGT 11499 Query 42066 TGCGCCGGTGAGCATGAAAACGGAGCGCATTTCCTTACTGCCCGGTGATGTCAATTACGT 42125 ||||||| | |||| | ||||| ||||| | ||||| |||||||| | ||| | Sbjct 11500 TGCGCCGTCGTCGCTGAAGAATCAGCGCGTTTCCCTGCTGCCTGGTGATGTGACTTATAT 11559 Query 42126 GGACATGG-CATCAGGTGGCGCGTTTT--AACCCGCCTATGAAATCAATCCTCGCGTTAA 42182 ||| ||| | | | | || ||| | || || ||| |||| || | Sbjct 11560 CGACGTGGTGAGCGGCCAGGACGGTTTCAAGCCTGCTTATCTGGTCAACCCGAATACTGC 11619 Query 42183 CGAACTGATCGCCAGCATTCAGGATGGCCGACAGATGGTCAATGAATGCTTTTTTGTCCC 42242 ||| ||| | || ||||||||| ||| |||| |||| || |||||| Sbjct 11620 CGACCTGCTGGCTGACATTCAGGACACCCGTCAGACCATCAACAGCGCCTACTTTGTCGA 11679 Query 42243 GCTTTTTAACATG-TTCAGCAATATCAATACCCGCAGCATGCCACGGGAGGCGGTTGTTG 42301 || || | ||| | ||| || ||||| |||||| ||||| ||| ||||| | | Sbjct 11680 CCTCTTCATGATGCTGCAG-AACATCAACACCCGCTCAATGCCGGTGGAAGCGGTGATCG 11738 Query 42302 AAATGCATGACGAAAAAATGCTGCAACTTGGCCCGGTACTCGAGCGGCTTAATGATGAAT 42361 | ||| | || || || |||| || |||||||| || ||||| || || || ||| Sbjct 11739 AGATGAAGGAAGAGAAGCTGCTAATGCTCGGCCCGGTGCTGGAGCGCCTGAACGACGAAG 11798 Query 42362 TTCTCGATCCGGCCATTGACCGTATTTTCAATATCATGTTGCGCCGCCATCTCCTTCCGC 42421 || | ||| || || || | ||| |||||| |||| | | || |||| Sbjct 11799 CGCTTAACCCGCTTATCGATCGCGTGTTCTCCATCATGGCGCGCAAGAACATGCTGCCGC 11858 Query 42422 CGCCACCGGAAGCCCTTCAGGGGCAGCCGTTGCGCGTGGAATATACCAGCGTATTGGCGC 42481 || ||||||| | ||||| ||| ||||| | ||||| | | ||| |||||| Sbjct 11859 AACCGCCGGAAGTTATGCAGGGCATGCCACTGCGCATCGAATACATCTCCGTTATGGCGC 11918 Query 42482 AGGCGCAGAAATCGATAGG---CACCGGCGCGATTGAGCGATTTGTTCTGTTTCTCGGCA 42538 ||||||||||||| || || |||| || | || | ||| ||| ||||| Sbjct 11919 AGGCGCAGAAATCTATCGGCCTCACCAGCCTGTCGCAGACA---GTTGGCTTTATCGGCC 11975 Query 42539 ATCTGGC-CCGCACAAATCCCGACGCGCTCGACAAGCTGGATACCGATGGGGCAGTGGAT 42597 | || || | | |||| || || || ||||||||||| || ||| ||| | || Sbjct 11976 AGCTAGCACAGTTCAAA-CCTGAAGCACTCGACAAGCTCGACGTGGATCAGGCTATCGAC 12034 Query 42598 GTTTACGGCGACATGCTCGGGGTACCGCCAACCATCACCAAATCCGATGAGCAGGTGCAG 42657 | | | ||| ||| ||| ||| |||||||| ||| | | | |||||||||||| Sbjct 12035 GCGTTCTCCGAAATGTCCGGCGTATCGCCAACCGTCATCGTTCCTCAGGAGCAGGTGCAG 12094 Query 42658 GCCGAACGGGAACAGCGGGCGCAGCAGCAACAGACGGCACAGGCCATGCAGATGGG 42713 | | || ||| |||| ||| | ||| ||| ||||||||||||||||||||| Sbjct 12095 GGCATTCGCGAAGAGCGCGCGAAACAGGTTCAGCAGGCACAGGCCATGCAGATGGG 12150 Score = 107 bits (118), Expect = 6e-19 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 26032 ACAACCGCGTTAACCAACTGCGCCTCATAGCCCAACACGCCATTGATGACATGCGTTTTT 26091 ||||||||||| |||| |||||| ||||| || | | ||| || | ||||| ||||| Sbjct 37284 ACAACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTC 37343 Query 26092 TGCGCCACAGCGAACGGGTCCATTCCCCAGCGCGCTGACTGCATAACAATCGCCAGACAA 26151 ||||||||||||||||||| ||| ||||| |||| | |||||| | ||||| || Sbjct 37344 TGCGCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAG 37403 Query 26152 TC-GGAGGGTTTCTTGCGTAGGTGTGCGGGAAC 26183 || | ||| |||| ||| ||||| || ||||| Sbjct 37404 TCAGCAGGCTTTCCTGC-CAGGTGCGCAGGAAC 37435 Score = 104 bits (114), Expect = 8e-18 Identities = 208/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 43669 GCAGTGCGGTGCGGGATTTGGCCTACTCGTTTGATGTCGATGGCTTTCAGGGCAATGACT 43728 |||| | ||| || ||| |||| ||||| || || ||||| || | ||||||| |||| Sbjct 17408 GCAGCGTGGTCCGTGATCTGGCTTACTCCTTCGACGTCGACGGGTACCAGGGCACTGACC 17467 Query 43729 TGACCGTCCTTGCCAACCAtttttttACCGGTTTTCAGT-TACTCGACTGGGCGTTTACC 43787 ||||| | || || ||||| |||| | | ||| | |||||||| | || | Sbjct 17468 TGACCATACTCGCAAACCACCTTTTC-CAGAAACGCAGCATTGTCGACTGGTCATTCTGC 17526 Query 43788 ATCACGCCCCTTTCGGTGGTGTGGTGTG--TGCGCAATGACGGGACCCTGCTGGGGTTGA 43845 ||| ||| | | | | | | | || | || | ||||| | ||||||| | ||| Sbjct 17527 ATCGTGCCG--TACAGCAGCGCGTTCTGCATTCGAGACGACGGAAAACTGCTGGTGCTGA 17584 Query 43846 CCTATCTGCGAGAACAGCAGGTCGCAGCATGGCATCAGCATCCCGCCGCCGGAAAGTACG 43905 |||||||||| || |||||||| || ||| | ||| || | |||| ||||||| Sbjct 17585 CCTATCTGCGCGATCAGCAGGTATTCGCCTGGGCGCCGCAGTCCAGCACCGGGAAGTACG 17644 Query 43906 AAGCGGTATGCAGCATCAGTGAGGGCACCGAAGACGCACTGTATTGCGTGGTTAACCGCA 43965 || ||| |||||| ||||||| || ||||| | |||| |||||||||||||| Sbjct 17645 AAAGCACCTGCTCCATCAGCGAGGGCAGTGAGGACGCTGTTTATTTCGTGGTTAACCGCA 17704 Query 43966 CGAT 43969 | || Sbjct 17705 CCAT 17708 >seq657 Length=45296 Score = 123 bits (136), Expect = 8e-24 Identities = 267/392 (68%), Gaps = 17/392 (4%) Strand=Plus/Plus Query 23573 AGTTCGTTAACCAGCTCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGC 23632 |||| || | |||||||| ||| ||||| || || |||||| || ||| ||| Sbjct 39108 AGTTTGTCCAGCAGCTCCATCATGTCACGATGGCGGATATGCTTCATCAGCAGCGTCAGT 39167 Query 23633 AGCGCCACCCGGCGATGGGTCAGGATTTC---GTCATCCGGTATTGCAGTGATATCGACC 23689 |||| |||||||||| ||| |||||| |||||| | |||||||||| ||| Sbjct 39168 GCGGCCATCCGGCGATGGTTCATGATTTCATTGTCATCAACGA---CAGTGATATCAACC 39224 Query 23690 AGCGGAAATGCCTGATGATAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGA 23749 |||||||| | | || | | ||||| | | | || | ||||||||||||| Sbjct 39225 AGCGGAAACGGATTTGTGTATATTTTAGCCGCAAGTGCCGGATTCTCAAAACAGTCCAGC 39284 Query 23750 CAGCGCGTGCTGTACGGATACGGCGACGTGGT-GCCGTGGTAAAACAGCAGCGGAATGAC 23808 ||| | |||||||||||||||| | | | | ||||| || ||||||| |||||| || Sbjct 39285 CAGTTCATGCTGTACGGATACGG-GCTGCGCTCACCGTGATAGAACAGCACCGGAATCAC 39343 Query 23809 CACCGGTAGCTGATCGTTGCCCTGTTCTAGATGCCGCTGCATCGCGGCGACCGCATACCG 23868 || || | || | ||| ||| || ||||| | |||||| || || || || || Sbjct 39344 CAGTGGCA-ATGTT--TTGTGCTGCTCCAGATGTCTCTGCATAGCCGCCACACTGTAGCG 39400 Query 23869 TAGCAATCGAAACGCCAT---CAGCTTTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTA 23925 || || ||||| | ||| ||| ||||| | |||||||||||| || || || Sbjct 39401 TAACATGCGAAAAGGCATGTACAGATTTTC---GGTGCTCTGGTGCTCGATGAGCGTATA 39457 Query 23926 GACGTAACCATCATGGCCCGTCGTGGTCTTCA 23957 || || || || | ||| ||||| |||| Sbjct 39458 AACATAGCCGTCTTCACCCCCGGTGGTTTTCA 39489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166769060128440