Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq6140 178 3e-40 seq7603 118 3e-22 seq362 96.9 9e-16 >seq6140 Length=1248 Score = 178 bits (196), Expect = 3e-40 Identities = 356/528 (67%), Gaps = 0/528 (0%) Strand=Plus/Minus Query 37693 CGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCT 37752 ||||||||| | ||||| || || ||||| | || || |||||| |||| | Sbjct 972 CGGCGTCGACCGCGGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGAT 913 Query 37753 CCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTC 37812 || ||| | | | || ||||| | |||| || || ||| ||||| || || Sbjct 912 GCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATC 853 Query 37813 CATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGA 37872 |||||| | || ||||| ||||| | |||||||| |||||| || |||| | |||| Sbjct 852 CATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGA 793 Query 37873 GAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTA 37932 || ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||| | || Sbjct 792 AAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTA 733 Query 37933 CGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATG 37992 ||| || |||||||| ||| | | ||||| ||||| ||||| || Sbjct 732 TGGCTATCAGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCAGATTGCGAA 673 Query 37993 GGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAA 38052 | ||| | ||| || | |||||| |||| || || ||| | || ||| ||||| Sbjct 672 TCTCGTCAGTGCGATAAAGCAAAATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAA 613 Query 38053 TGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGT 38112 | || | || || ||| ||||||||| || || | | || |||||||| || Sbjct 612 TCCGGCGCTCGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGT 553 Query 38113 CGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTT 38172 ||| |||| | | || ||| | | |||||||||| |||| ||| | || | Sbjct 552 GGCCGACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGT 493 Query 38173 GCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCA 38220 |||||| || ||||| ||| || ||| |||| | ||||| || || Sbjct 492 GCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCA 445 >seq7603 Length=749 Score = 118 bits (130), Expect = 3e-22 Identities = 398/609 (65%), Gaps = 22/609 (4%) Strand=Plus/Plus Query 37739 TTCGGCCGCCAGCTCCGCTTCAA-CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAA 37797 ||||| | |||| | || ||| | ||| | || || ||||||||||| || || || || Sbjct 141 TTCGGTCACCAGATGCGTTTCGATCTTGCC-GACGGCTTTCCGCTCGTCACCACCAAGAA 199 Query 37798 ATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGT 37857 | || || || || | | ||||| || ||||| | ||||| | ||||| Sbjct 200 GGTCCACCTCAAGTCGATAGTCAACGAACTCCTGTGGTTCCTGCGCGGCGACTCCAACGT 259 Query 37858 CCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGA 37917 | |||| ||| | ||||| | || ||||| |||||||| ||||| ||||| || Sbjct 260 GGCGTGGCTGCACGAGCACGGCGTCTCCATCTGGGACGAGTGGGCCGACGAGAACGGTGA 319 Query 37918 TCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAAC-CA 37976 |||||||| | ||||||| || ||||| ||| | |||| | | || Sbjct 320 ACTCGGCCCCGTCTACGGCGTCCAGTGGCGTAGCTGGCCCACCCCTT-CGGGCGAGCACA 378 Query 37977 TCGACCAGATCGCATGGGTTGTCGAA-----GAGATCAAACGAAATCCGCATTCACGCCG 38031 ||||||||||| | | ||||| | | || ||| ||| |||| || || Sbjct 379 TCGACCAGATCACGCAGACCGTCGAGACTCTGCGCTCCAACC----CCG-ATTCGCGGCG 433 Query 38032 GCTGCTGGTGAGCGCTTGGAATGTAGCAGA-ATTGGACGAGATGAAGCTGCCGCCGTGTC 38090 | | | || || ||||| || || || ||| | ||||| ||| ||||||| | Sbjct 434 GATCATCGTTTCGGCGTGGAACGTCGCCGACATTCCGC-AGATGGCCCTGGCGCCGTGCC 492 Query 38091 ATTACGC---CTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGC 38147 | ||| ||| |||||||| |||||| ||||| | | || ||| | | | |||| Sbjct 493 A---CGCTTTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTACCAGC 549 Query 38148 GCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGC 38207 || || || | ||| | || | ||||| |||||||| |||||||||||| | || | Sbjct 550 GCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCCAGCTACGCGCTGCTCACCC 609 Query 38208 ATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACG 38267 | ||| | ||||| || || | || ||||| || || | | |||||||||||| Sbjct 610 ACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTCGTCTGGACCGGCGGCGACT 669 Query 38268 TCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCC 38327 ||| | ||| | ||||| | || || | || |||||| ||||| |||| | Sbjct 670 GCCACATCTACGACAATCACGTCGACCAGGTGACCGAGCAGCTCGGCCGCGAACCGCTGC 729 Query 38328 CGCTGCCGA 38336 || |||||| Sbjct 730 CGTTGCCGA 738 >seq362 Length=339261 Score = 96.9 bits (106), Expect = 9e-16 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 37739 TTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAA 37798 || |||| ||| | | |||||| | || || || ||||| || || || || |||||| Sbjct 148559 TTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAA 148500 Query 37799 TTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTC 37858 | ||| | ||||| || | |||||| | |||||||||| || || || || | Sbjct 148499 CTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATT 148440 Query 37859 CGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGAT 37918 |||| || | | || || | ||| |||||||||||||| || |||||||| || Sbjct 148439 GGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGAC 148380 Query 37919 CTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGG 37954 || ||||| |||| || | |||||||| || ||| Sbjct 148379 CTGGGCCCTGTTTATGGATCACAATGGCGTTCATGG 148344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130618273343250