Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq404 325 3e-84 seq98 178 1e-39 seq689 132 4e-26 seq531 109 4e-19 >seq404 Length=78127 Score = 325 bits (360), Expect = 3e-84 Identities = 812/1217 (67%), Gaps = 31/1217 (3%) Strand=Plus/Plus Query 65722 GAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCA-TCGC 65780 ||| || || ||||| ||||||||| ||| || ||||| | || || ||| Sbjct 48679 GAGGGCAGCGAAATAGATGGTCTCGGCAATCTCGCGGTTAAGGTTGGCAGCGGCAGTCGA 48738 Query 65781 TCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGA 65840 ||| | ||||||| ||| || ||| |||||| |||||||| | || ||||||| Sbjct 48739 A-TCGAATGGCATACGCATGGCGATAAAGACGTCGGCGAGACCTTGGATACCGATACCGA 48797 Query 65841 TGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGA 65900 | ||||||||||||| ||||| | ||||| | ||||||||||| ||| || | Sbjct 48798 TTGGACGATGACGCATGTTGGAGGTACGGGCCTCTTGAACAGGGTAGTAGTTGCGGTCAA 48857 Query 65901 TAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAAT--TGTTCGAAATC 65958 | ||||| || | ||||| || | | | || | | || | |||| | | Sbjct 48858 TGATGCGGTTGAGGTTGCGAGTGATGATA--CAGGTCATTTCAAAGAGATGTTGGTGGTT 48915 Query 65959 AAAATGTTTAGGA---CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015 ||| || ||| | ||| || | | ||| ||||||||||| ||||||| || Sbjct 48916 AAAGTGGGCGGGAACGCCATCCT---TGGCTGGCACAACAAACTTGGGTAGGGCAATCGA 48972 Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 ||||||||||| || || | ||||| |||| ||| || | |||||| || ||||| || Sbjct 48973 GGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTGTATTGGACAATCTCTGTGCAGAG 49032 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTT 66135 || ||| | |||||||| | ||||||||| || |||| |||||| || ||||| Sbjct 49033 GTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTTGACTTGGCATTGCAGGCGTCCTT 49092 Query 66136 GTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGC 66195 ||| | || || || ||||| ||||||| || ||||| || |||| | ||| ||| | Sbjct 49093 GTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGACTCGATAATGGAGAACCAGAGATC 49152 Query 66196 GCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT----TCGTAATGTTCGTAGAGGT 66251 | ||||| | || | | | || | | | || ||||| | |||||| Sbjct 49153 TTGGGCCTTGATGGT-CTTGCGACCGAGACCTGGGGTGGCCTCGTAGCGGGTGTAGAGAG 49211 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 ||| || ||||| || | |||| ||| || || ||||| | || | Sbjct 49212 CGCGGAACTCGTCTCCCCAGCAATCAGCGAGACCTGGGGCCTCGTTGGGACAAAAGAGTG 49271 Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||| || | | || ||||| |||||| ||||| | || |||||||||||| | Sbjct 49272 TCCACTCGGCGTTGGCCTCGACACGCTCCATAAAGAGATCGGATACCCAGAGGGCGTAAA 49331 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 |||| || || || || ||| || | ||||| || ||||| | ||| |||||||| | Sbjct 49332 AGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGGTTCTTGCGAAGGTCAAGGAACTCCA 49391 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491 || ||||| |||||||| || ||||||||||| || | ||| | || ||||| || | Sbjct 49392 TGACATCGGCGTGCCATGGCTCGAGGTAGATGGCAAAGGCTCCCTTGCGCTTGCCACCTC 49451 Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551 ||||||||||||||||||| | |||||| || || | ||| || ||||| ||||| | Sbjct 49452 CTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACGCGAAGCATGGGAACGAGACCGTTGG 49511 Query 66552 ATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGAC 66611 || | || ||||||||| ||| || | || || || | ||| ||| |||| Sbjct 49512 ATGTACCGTTGGTGCCGCGGATATATGAACGGGCAGCGCGGATCTTGTGGACAGCGAGAC 49571 Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGT 66671 |||| || ||||||| ||| |||||| || || | | || | | || || | Sbjct 49572 CAATGCCTCCGGCCGACTTGGAGATGAGGGCGCATTGCTTGAGGGTATCGTAGATACCAT 49631 Query 66672 CAATGGAGTCACCCTTGA--TGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 | || |||||| |||| | ||| || ||| |||| || | ||| || | Sbjct 49632 CGATCGAGTCATCCTTCATCTGGACA--AGGAAGCACGACGACATTTGTGG---CGAGCA 49686 Query 66730 GGCGGCCGAG---AAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATT 66786 || | ||||| |||||||| || || ||||| |||||||| | | || | | | Sbjct 49687 GGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGGGTAAAGTAGCGCTGGGAAAGCTGCTC 49746 Query 66787 GTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCA 66845 || ||||||||| |||| ||||||| |||| || || || || | ||| ||||| | Sbjct 49747 ATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCGTGGATACCAAGAGAGACA-CGCATGA 49805 Query 66846 GGAGGTATTGAGGCCGTTCGACCA-GCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 | | || || || || || | | | || || | ||| | |||||||| || ||| Sbjct 49806 GCATGTGCTGGGGACGCTCAATGATGACG-TCGTCGATGCGGTGCAAGTAGGAACGCTCC 49864 Query 66905 AGGGTCTTGATACCAAA 66921 | |||||||| ||||| Sbjct 49865 AAGGTCTTGAAGCCAAA 49881 >seq98 Length=772300 Score = 178 bits (196), Expect = 1e-39 Identities = 431/647 (67%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 || || |||||||| || ||||||||||| ||||| || ||||||| || | || Sbjct 410739 GAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTAT 410680 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | || |||||||| || || | || | | ||| || | ||||| ||||| Sbjct 410679 GCGCTGCTGATCGATACCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC 410620 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT 61467 | |||||| | || || ||| ||||| || ||||| || ||||| | Sbjct 410619 GTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGG- 410561 Query 61468 ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 ||| | |||| ||||| ||| |||| || || | || || || | || ||| Sbjct 410560 ----CGGAAAT-TTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTC 410506 Query 61528 AGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 || || | | | || | ||||| |||||||| ||| | || || ||||| || || || Sbjct 410505 AGCGGGAGCTTCTGTT-CGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAAC 410447 Query 61587 CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCT 61646 ||| || ||||||||||| || | || ||||| ||||||||||| ||||| |||| Sbjct 410446 CTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCT 410387 Query 61647 ATTCAAACGCTAT-CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | ||| || || ||| | | |||| || || ||| | || | Sbjct 410386 TTATAAA----ATGCTCAAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCG 410331 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | |||||| |||||| |||||||| | || || || ||||| || | || ||||| | Sbjct 410330 ACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGA 410271 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 ||||| ||| ||||| ||||||||||| |||||||| ||| | | || || Sbjct 410270 TGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAAC 410211 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 ||||| | || ||| || | | || || |||||||| ||||| ||||| || | Sbjct 410210 TGGGTTATACCAAAATATATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCC 410151 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || | ||||| || ||||| || ||||||||||| || || |||||| Sbjct 410150 TGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAA 410104 Score = 116 bits (128), Expect = 3e-21 Identities = 373/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Plus Query 65993 ACAAA-CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||| ||||| || | ||| || || ||||| || ||||| | |||||| | || Sbjct 408565 ACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGCAACCTCGTCTTTGGAAGT 408623 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT---ATGGTGCCCAAATTCTGTTG 66108 |||||| | |||||| || || || || | | | | ||||| || ||||| || || Sbjct 408624 ATACTCTATAATTTCTGTACAAAGGTT---GGAACTTTTGATGGTTCCTAAATTTTGCTG 408680 Query 66109 ATTACTCTTGC-GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTT 66167 || |||| | |||| |||||| || |||| || || || || ||||| |||| | Sbjct 408681 GTTGGATTTGCTGTTTGC-TGCATCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCT 408739 Query 66168 GGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT---ACGTAC-CGCCCTA 66223 | || || | ||||| |||||| | |||| || | || ||| | || ||| Sbjct 408740 GTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTTACGGGCACGTCCTT 408799 Query 66224 CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGA 66283 | ||| |||||| | || || | ||||| | |||| | || | ||| Sbjct 408800 CTTTT----TCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGT 408855 Query 66284 CATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATA 66343 | || | || ||||| | | ||| || || | | |||||| | | ||| Sbjct 408856 CCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATG 408915 Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || || ||| || ||| ||||| ||||| | ||| | || || | || || | || Sbjct 408916 AACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCA 408975 Query 66404 TGATTTTTGCGCAAGTCGAGGAA-CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 || ||||| |||| ||| || || |||| | || ||||||||||| |||||||| || Sbjct 408976 TGGTTTTTACGCAGGTCCAGAAAACTCAGC-ACATCTGCATGCCATGGCTCCAGGTAAAT 409034 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 ||| || | || ||||||| || ||||| ||||| || || || ||| || ||| || Sbjct 409035 GGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAA 409094 Query 66523 GACACGCAACATCGGTACGAGCCCGTT 66549 || |||||| ||||| | ||| || Sbjct 409095 TACTTTCAACATAGGTACAATCCCATT 409121 >seq689 Length=46727 Score = 132 bits (146), Expect = 4e-26 Identities = 351/523 (67%), Gaps = 16/523 (3%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||||||||||||| ||||| || || || ||| ||| || || ||||| || | Sbjct 18074 TTGTTCAATGCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGA 18133 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 |||||| | | | | | | | |||| || || ||| |||| ||||| | |||||| Sbjct 18134 TGGATCTCAAATTCCAAGTCG---TTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAG 18190 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCG--CAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 ||| | |||||| ||| | |||| | | ||||||||||| | ||||| |||||| | | Sbjct 18191 GGTATCTTTTTCTCTGG-TAGTTT-CTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGA 18248 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| ||| ||||||| ||| |||||||| || ||||| || |||| || || | Sbjct 18249 TGCCAGGTTTGACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACT 18308 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCG-GAGGAGCGTGTGGG 61691 |||| | |||| | || | | || || || | || || | || | | | | Sbjct 18309 TTGCCTGTCTGCTCTACA---CCAAGCTCGTCAACAAGCTCGACGCCAAGACCAT-CGAG 18364 Query 61692 TGAGATTGTTCGTGAGGCGGT-AACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750 | ||| | || || || || ||| | || |||| ||| | || || | | |||| Sbjct 18365 T-CGATCATCCGCGACGCCGTCGACTGT-GAGAAGGAGTTTGTCACCGAGTCACTTCCCG 18422 Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 || ||||| |||||||| || | ||||| || || ||||| ||| ||||||| Sbjct 18423 TCGATCTCATTGGCATGAACAGTCGTGCCATGTCCCAATACATTGAGTTTTGCGCCGACC 18482 Query 61811 GTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 |||| | |||| | || || |||||| || | |||||||| || | | Sbjct 18483 GTCTACTCGTCGCCCTCGGCTACAAAAAGATCTACAACTCTGCCAACCCATTCGACTGGA 18542 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 |||| ||||| ||| || | ||||||| || |||||||| || Sbjct 18543 TGGAGATGATCTCGTTGCAGCGCAAGACCAACTTTTTCGAAAA 18585 >seq531 Length=89189 Score = 109 bits (120), Expect = 4e-19 Identities = 363/547 (66%), Gaps = 32/547 (6%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC-CTTCAA 61454 || |||||||| || ||||| || || || || ||| || |||||||| |||| Sbjct 88110 TTATTCAATGCTATAGAGACAATTCCATGTGTCAAAAAGAAGGCTGATTGGGCTCTTCG- 88052 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | || || | || | |||| || || || |||||||||| | ||||| Sbjct 88051 TTGGATAAACA--ACT-CTGCATCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGA 87995 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCG--CAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||| | |||||| |||| |||| | | | || || ||| | ||||||||||| | Sbjct 87994 AGGTATCTTTTTCTCTGGAA-GTTT-CTGTTCGATATTCTGGCTCAAGAAACGTGGCTTG 87937 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA--CGCGACGAGGGCATGCATTGTG 61630 ||||| |||||| || | || |||| |||||| ||||| || || | ||||||| Sbjct 87936 ATGCCTGGTCTGGCCCACTCGAACGAGT--ATATCAGTCGCGATGAAGGTTTACATTGTG 87879 Query 61631 ATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAA-----TCGTCCGTCGGAGGAGC 61684 | ||||| ||| ||| || | || | | | || ||| || || | Sbjct 87878 ACTTTGCCTGT----CTACTCTATAGCAAGTTACTAAACAAACTCGACCCATCGACAATA 87823 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTA-ACTATCGAACAGGAATTTCTGACTGACGCT 61743 | || | | |||| || |||||| ||| | ||| | || ||| | || || || Sbjct 87822 GAGTCCATCA-----TTCGAGATGCGGTAGACTGT-GAAAAAGAGTTTGTAACAGAGTCT 87769 Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 ||||| || | || || |||||| |||||| |||||| | ||| |||||||| | Sbjct 87768 TTGCCAGTGGACTTAATAGGAATGAATAGTGGACAAATGTCTCTGTACATTGAATTCTGT 87709 Query 61804 GCCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATT 61862 ||||| || || | || | |||| || || | | || || || || |||||||| Sbjct 87708 GCCGATCGACTACTCGTTGCCCTTGGCTAC-AACAAGCTATACAACACCAACAACCCATT 87650 Query 61863 TGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGG 61922 ||| | ||||| |||||||| | | | | || || |||||||| | ||||| | Sbjct 87649 TGACTGGATGGAAATGATTTCTTTACAAAGAATAACAAACTTTTTCGAACATCGTGTGGC 87590 Query 61923 CGACTAT 61929 ||||||| Sbjct 87589 CGACTAT 87583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397500140733200