Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq1862 235 1e-57 >seq1862 Length=5913 Score = 235 bits (260), Expect = 1e-57 Identities = 273/368 (74%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 12175 GACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCCG 12234 |||||| | |||||| ||||||| |||||| ||| || || || | || ||||| ||| Sbjct 5195 GACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCCTGAACTTCGTTTCACCCCG 5254 Query 12235 GCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCAG 12294 || ||||| || || || |||||||| || || |||||||| || || |||||| | Sbjct 5255 GCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTACCTTCGACCGTAAT 5314 Query 12295 GCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGCC 12354 | || || ||||| ||||| || |||||||||||||| ||| | | ||||| || || Sbjct 5315 TCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCA 5374 Query 12355 GCCGAGAACGTCGCCGAGAGCTTGTCGCGGGGCTCGCGGGTCATCGTCACCGGCAAGCTC 12414 |||||||||||||| ||||||||| | || || || || || ||||| | |||| |||| Sbjct 5375 GCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGAGTAATCGTGAGCGGCCGGCTC 5434 Query 12415 AAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGAGGTC 12474 ||| || | | ||| || || ||||| || ||||| || ||| |||| || || ||| Sbjct 5435 AAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTC 5494 Query 12475 GACGAGATCGGCCCCAGCCTCCGCTACGCCACCGCCACCGTGAACAAGGCCAACCGCGGC 12534 || || ||||| || || |||||||| || | || |||||||||||||| || Sbjct 5495 GATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAGGTCAACAAGGCCAACCGTGGT 5554 Query 12535 GGGGGAGG 12542 || || || Sbjct 5555 GGCGGCGG 5562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126174212555160