Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq98 302 1e-77 seq1386 178 4e-40 seq26 163 9e-36 >seq98 Length=772300 Score = 302 bits (334), Expect = 1e-77 Identities = 823/1252 (66%), Gaps = 30/1252 (2%) Strand=Plus/Plus Query 1684 GATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGT- 1742 ||||| | || || || | ||||| || |||||||| || || |||| ||||| || Sbjct 392659 GATGTTCATGCGCGGCAAATACTTGATTCCCGCGGTAATCCTACTATTGAGGTAGACGTA 392718 Query 1743 -TTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTG 1801 ||||| |||| |||| | || || | || |||||||| || ||||| |||| Sbjct 392719 ATTACAGAGAATGGTGTGCTT--GGCCGTGCAGCAGTACCTTCAGGTGCTTCAACGGGTG 392776 Query 1802 AACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGGTACTC 1861 |||||||| ||||| ||| | || ||| ||| || || || ||| | Sbjct 392777 TTCACGAAGCCGTAGAGCTTAGGGACAATGATAAATCTGTATATATGGGCAAAGGTGTTT 392836 Query 1862 AAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTAC 1921 |||||| |||| ||||| ||| | ||||| || | | | ||| | || ||| Sbjct 392837 TAAAAGCTGTTGCCAACGTTAACGATAAGATTGCCGATGCCTTAAAAGGAGTGGATGTAT 392896 Query 1922 GTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTA 1981 ||| ||| | | || || | ||||||| || || || || ||| ||||| | Sbjct 392897 TTGAGCAAAATGCGATCGATGACCTAATGATCAAACTGGATGGCACAGAAAATAAAGGAA 392956 Query 1982 AACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACT 2041 |||| |||||||| || ||| | ||||| ||| | || || || |||||||| | Sbjct 392957 AACTGGGTGCCAATGCCATTTTAGGTGTTTCTTTAGCCGTGGCTAAAGCAGCTGCACAGG 393016 Query 2042 A---CCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAA 2098 | || | | ||| | ||| | || |||| || | || | || || || | Sbjct 393017 AAAGCCGTCAG---CCATTATACCGTTATATTGGTGGTGTAAATGCCAATACCCTGCCCA 393073 Query 2099 CTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAG 2158 ||||||||||||||| | ||||| ||||||||||| || || || || ||||| || | Sbjct 393074 TCCCAATGATGAACATCGTAAACGGCGGTTCTCACTCTGATGCCCCTATTGCTTTTCAGG 393133 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||||||||| | || | |||||| | | || ||||| | | ||||| | | Sbjct 393134 AATTTATGATCATGCCAGTTGGTGCGACTTCTTTTTCCGAAGCCTTAAGATGGGGAACAG 393193 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTG 2278 || | || ||| || || || | | || | || ||| || || ||||||| Sbjct 393194 AAGTATTTCACAACCTGAAAGCCATTTTACATGACAGGGGCCTTTCTACGGCTGTAGGTG 393253 Query 2279 ACGAAGGTGGTTTCGCACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCATCA 2338 ||||||||||||| || || ||| || || |||||||||| || ||||| || | | Sbjct 393254 ACGAAGGTGGTTTTGCCCCAACTTTTGATGGTACTGAAGATGCAGTGGAAACCATTCTTA 393313 Query 2339 AAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTGTG 2398 |||| |||||| || || || ||||||| | | | | | | ||||||| | Sbjct 393314 AAGCCATCGAAAAAGCAGGTTACAAACCAGGTGAGCAAATCTGCCTTGCTTTTGACTGCG 393373 Query 2399 CATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGGTG 2458 || | |||||||| ||| | ||| | ||| ||||| || || ||||||||||| | Sbjct 393374 CAGCCTCTGAATTTTACAA---AGACGGCAAA---TACGATTATACAAAATTTGAAGGCG 393427 Query 2459 AAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTTAACA 2518 | | ||| ||||| | ||| ||||| || ||||| | | || || Sbjct 393428 ATAAAGGTGCCGTTCGCAGCAGTGCTGAACAGGCAGAATACCTGGCTCAGCTGTCAGCCA 393487 Query 2519 AATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAAT 2578 |||| ||||||||| |||| |||||||| |||| |||| | ||||||| || ||||||| Sbjct 393488 AATATCCAATCATCTCTATTGAAGATGGAATGGCCGAAGATGACTGGGCTGGCTGGAAAT 393547 Query 2579 CTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC-- 2636 || || ||| | |||| |||||| |||| || || || || || ||||| Sbjct 393548 TGCTGACCGAAAAAATCGGTGACCGCGTTCAACTGGTAGGAGATGATTTGTTTGTAACCA 393607 Query 2637 ---TAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTAT 2693 ||| || | |||| || ||||||||| | ||| |||| ||||| || || | Sbjct 393608 ATGTAAAAC-GTTTAC----AACAAGGTATTGACAACCACACTGCAAACTCTATTCTGGT 393662 Query 2694 CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGA 2753 ||||| ||||| ||||| |||| || ||||| | | || | || | | | | Sbjct 393663 TAAAGTAAACCAGATCGGATCTTTAACAGAAACCATCAATGCCGT--AACTTTAGCACAA 393720 Query 2754 AGC--TGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 ||| ||| || || | || | ||| | ||||| || |||||| | || || Sbjct 393721 AGCAATGGTTATACCTCGGTCATGAGCCACAGAAGTGGTGAGACCGAAGATACCACGATT 393780 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 ||||| |||| || || ||| || || || || || ||||| || || || Sbjct 393781 GCTGACCTTGCCGTGGCCCTGAACTGCGGACAGATCAAAACCGGTTCTGCTTCCCGCTCT 393840 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 ||| | || || ||||||||||| |||||||| || ||||| |||| |||| Sbjct 393841 GACAGGATCGCAAAATACAACCAGTTGCTTCGCATTGAAGAAGAACTGGGTG 393892 >seq1386 Length=28181 Score = 178 bits (196), Expect = 4e-40 Identities = 543/823 (66%), Gaps = 40/823 (5%) Strand=Plus/Minus Query 2101 CCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATC--GCTTTCCAAG 2158 || ||||||||| |||||||||| || | ||| | ||| ||| | | |||| | Sbjct 21350 CCGATGATGAACGTCATCAACGGCGGCGCGCACGCCGACAA--CAACCTGGACATCCAGG 21293 Query 2159 AATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTG 2218 |||| ||||| | || | || || || | ||||| ||||| | || | || || | Sbjct 21292 AATTCATGATCATTCCCGTGGGCGCCCCGTCGTTCAAGGAAGCCGTCCGCTACGGCGCGG 21233 Query 2219 AAATCTTCCACGCGCTTAAGAAAATCCTTAA--AGAACGTGGACTTGAA-ACAGCCGTAG 2275 || | |||||| |||| || || ||||| | |||| || | |||| || ||| | Sbjct 21232 AAGTATTCCACACGCTGAAAAAGATCCTGCACAAGAA---GGGCCTGAACACCAACGTGG 21176 Query 2276 GTGACGAAGGTGGTTTCGCACCTCGTTTCGACGGAAC--TGAAGATGGTGTTGAAACT-A 2332 | |||||||| |||||||| || || | | ||| |||||| | | || || | Sbjct 21175 GCGACGAAGGCGGTTTCGCGCCATCCTTGGCC--AACCATGAAGAAGCCATC-AAGCTGA 21119 Query 2333 TCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTG 2392 ||||| | || ||||||| || || || | ||||| | | | ||||| || | Sbjct 21118 TCATCCAGGCCATCGAAGAAGCGGGCTACGAGCCAGGCACGCAGATCGCCATCGGCCTCG 21059 Query 2393 ACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTG 2452 | || || | || || |||||| | ||||| |||| || | || | Sbjct 21058 ATTGCGCCGCGTCCGAGTTCTACAA----GAACGGCAAGT----------ACGAGATG-G 21014 Query 2453 AAGGTGAAGGCGCTGCTGTTCGT-ACTGCTGCAGAACAAATCGACTACCTTGAAGAATTG 2511 |||| |||||| ||| | | || || | || | | || || | || || Sbjct 21013 AAGGCGAAGGC----CTGAGCCTGACGGCCACCGAGTTTACCAACCTGCTGGC-GACCTG 20959 Query 2512 GTTA-ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGG 2570 || |||| ||||| |||||| | |||||||| | ||| ||||| |||||||||||| Sbjct 20958 GTGCGACAAGTACCCGATCATCTCGATCGAAGACGCGATGCACGAAGGCGACTGGGACGG 20899 Query 2571 TTGGAA-ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCT 2629 ||| ||| || || | || || ||||| ||| |||| || || ||| | | Sbjct 20898 CTGGGCGATC-CTCACCCAGGAACTGGGCAAGAAAGTGCAACTGGTCGGCGATGACCTGT 20840 Query 2630 TCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCC 2689 || || ||||| ||| || |||| || || || | || ||||| |||| Sbjct 20839 ATGTCACCAACACCAAGATCCTGAAAGAAGGCATCGCGAAAGGCATCGCCAACTCGATCC 20780 Query 2690 TTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGA 2749 | ||||| | ||||| ||||| || |||| ||||| || | ||| ||||||||||| | Sbjct 20779 TGATCAAGTTCAACCAGATCGGCACCCTGACGGAAACCTTCGCCGCCATCGAAATGGCCA 20720 Query 2750 AAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAA 2809 | || || ||||| || || | || ||||| || || ||||| ||||| || || | Sbjct 20719 AGCGCGCCGGCTACACGGCCGTCATTTCGCACCGCTCGGGCGAAACGGAAGACTCGACCA 20660 Query 2810 TCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTA 2869 |||| ||||| || || || || ||||| || || ||||| || || |||| ||| Sbjct 20659 TCGCCGATATCGCCGTCGCTACCAACGCCCTGCAGATCAAGACGGGCTCGATGTCGCGTT 20600 Query 2870 CTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | ||||| || || || |||||||| |||| || ||||| || Sbjct 20599 CGGACCGCATGGCCAAGTACAACCAGCTGCTGCGCATCGAGGA 20557 >seq26 Length=69211 Score = 163 bits (180), Expect = 9e-36 Identities = 279/402 (69%), Gaps = 2/402 (0%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | |||||||| || ||||||| |||||||| || |||||| Sbjct 51189 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGCTGGCTGGAAAGTG 51248 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 | || || | || | || | || |||| || |||||| | ||||| || ||| Sbjct 51249 TTGACCGACAAGATCGGCGAGAAGATCCAGCTGGTGGGCGACGACCTGTTCGTGACCAAC 51308 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 || ||| || |||| || | | || | | | || ||||| ||||| ||||| | Sbjct 51309 ACCAAGATCCTGAAAGAAGGCATCG-ACAAAAAGATCGCCAACTCGATCCTGATCAAGTT 51367 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || |||| ||||| | || || ||| | ||||| || | || || Sbjct 51368 CAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 51427 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| || || ||||| ||||| || || || || || | Sbjct 51428 CTACACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACCT 51487 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || | ||| ||||| || || ||||| ||||| ||| ||| | || || | Sbjct 51488 GGCCGTGGGCACTTCGGCTGGGCAGATCAAGACCGGTTCCCTGTGCCGTTCCGATCGCGT 51547 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 | | || |||||||||||||| ||||||||||| ||||| || Sbjct 51548 TTCCAAGTACAACCAATTGCTGCGTATCGAAGAGCAACTGGG 51589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156012449351220