Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq13026 710 0.0 seq3963 455 8e-124 seq3588 289 7e-74 seq3589 159 9e-35 seq1862 98.7 3e-16 >seq13026 Length=398 Score = 710 bits (786), Expect = 0.0 Identities = 396/398 (99%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 9504 TGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCAGCCTTGCTGGGCCGGCGCCAT 9563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCAGCCTTGCTGGGCCGGCGCCAT 60 Query 9564 CGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCACGCCTGGTGTGGC 9623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGCGGACCGGGGTGAGGTCGATGATCACGGTGACGTACTTGTCGCCACGCCTGGTGTGGC 120 Query 9624 GCCAGACGTGCTCATCGACGCCAATGACCTTCACGCCCTCAAACCGCGTGGGGTCGTTGA 9683 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 GCCAGACGTGCTCATCGACGCCAATGACCTTCACGCCCTCGAACCGCGTGGGGTCGTTGA 180 Query 9684 TCAGCAGCCGCTTGCCTTCAGCCAGGACCGCGTTGTTGGCGGTGTCCCACGCGACCCCGA 9743 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 181 TCAGCAGCCGCTTGCCTTCAGCCAGGACCGCGTTGTTGGCGGTGTCCCACGCGAGCCCGA 240 Query 9744 GTCCCTCGGCGACACGGGCGACGGTGAGGTGTGCGACCACGATCCCTTCCAGCGCCCACC 9803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTCCCTCGGCGACACGGGCGACGGTGAGGTGTGCGACCACGATCCCTTCCAGCGCCCACC 300 Query 9804 GCAGCCCGGTGCGCGAGAGCTTCGCGCGTGGCTCCGCCGCGGCGCTGGTGTCTTGGCGCC 9863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCAGCCCGGTGCGCGAGAGCTTCGCGCGTGGCTCCGCCGCGGCGCTGGTGTCTTGGCGCC 360 Query 9864 ACACGTGTCCGCAGTCGGCACAGCGGTAGCGGCGCACT 9901 |||||||||||||||||||||||||||||||||||||| Sbjct 361 ACACGTGTCCGCAGTCGGCACAGCGGTAGCGGCGCACT 398 >seq3963 Length=571 Score = 455 bits (504), Expect = 8e-124 Identities = 254/255 (99%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 357 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 358 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCTGCGCAGGTGTTCGAG 417 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAG 9000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAG 477 Query 9001 CACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTT 9060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTT 537 Query 9061 GGGGACGCCGGCGCT 9075 ||||||||||||||| Sbjct 538 GGGGACGCCGGCGCT 552 >seq3588 Length=832 Score = 289 bits (320), Expect = 7e-74 Identities = 175/185 (95%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 10094 GCGAAGGCGGTCAGGTCAGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCG 10153 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 699 GCGAAGGCGGTCAGGTCAGGGCGGCCGAAGCCGGCCGGCGGGGTAGCGTCGGTCACGTCG 640 Query 10154 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTG 10213 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 639 AGGTCTTTCGGATGGATGGCGTAGGAACCTCCGTCGTCGGGAGACCTCGACGTCTATCTG 580 Query 10214 CGGACCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCCCGCAATCAACCTCG 10273 |||||||||||||||||||||| |||||| ||||||||||||||||| || | | ||| Sbjct 579 CGGACCGACGCGCCCGGCCGACTTACACCGTCATCTGAGAAGACCCCTGAAACGTCTTCG 520 Query 10274 ACGAC 10278 ||||| Sbjct 519 ACGAC 515 Score = 178 bits (196), Expect = 3e-40 Identities = 112/121 (93%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 10280 CTTTCGGATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGA 10339 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 635 CTTTCGGATGGATGGCGTAGGAACCTCCGTCGTCGGGAGACCTCGACGTCTATCTGCGGA 576 Query 10340 CCGACGCGCCCGGCCGACCTACACCCTCATCTGAGAAGACCCCGCAATCAACCTCGACGA 10399 |||||||||||||||||| |||||| ||||||||||||||||| || | | ||||||| Sbjct 575 CCGACGCGCCCGGCCGACTTACACCGTCATCTGAGAAGACCCCTGAAACGTCTTCGACGA 516 Query 10400 C 10400 | Sbjct 515 C 515 >seq3589 Length=1349 Score = 159 bits (176), Expect = 9e-35 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 10164 GATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGACCGACG 10223 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 751 GATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTACCTGCGGACCGACG 810 Query 10224 CGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10259 ||||||||||||||||||||||||||| ||||| || Sbjct 811 CGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 846 Score = 159 bits (176), Expect = 9e-35 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 10286 GATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGACCGACG 10345 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 751 GATGGATGGCGTAGGAACCTCCATCGTCGGGAGACCTCGACGTCTACCTGCGGACCGACG 810 Query 10346 CGCCCGGCCGACCTACACCCTCATCTGAGAAGACCC 10381 ||||||||||||||||||||||||||| ||||| || Sbjct 811 CGCCCGGCCGACCTACACCCTCATCTGGGAAGAGCC 846 >seq1862 Length=5913 Score = 98.7 bits (108), Expect = 3e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 36426 GCGAAACCCCTATCACCATCGTGGGCAACCTCACCGCCGACCCCGAACTGCGATATACCA 36485 |||| ||| |||||| || | || ||||| || || || || ||||| || | ||| Sbjct 5193 GCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCCTGAACTTCGTTTCACCC 5252 Query 36486 ATTCGGGCATTGCCGTCGCCAACTTCACCGTCGCATCCACACCACGCACATTCGACCGGC 36545 |||| || || || |||||||| || || ||||| || || || |||||||| Sbjct 5253 CGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTACCTTCGACCGTA 5312 Query 36546 AAGCCAACGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCTCGGTGTGGCGTCAGC 36605 | |||| |||||||| |||||||| || |||||| ||| ||| | ||||| | Sbjct 5313 ATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAG 5372 Query 36606 CGGCCGAGAACGTGGCCGA 36624 | ||||||||||| || || Sbjct 5373 CAGCCGAGAACGTCGCGGA 5391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126705324211620