Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq6140 140 5e-28 seq7603 118 2e-21 seq362 104 4e-17 seq58 95.1 2e-14 seq3886 89.7 8e-13 >seq6140 Length=1248 Score = 140 bits (154), Expect = 5e-28 Identities = 200/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 196086 TCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAGCTGACCGTACCGGCACAGGCACTA 196145 |||| ||||| |||||| || |||| |||| | ||||||||||| |||||||| | Sbjct 993 TCTT-CAGCATGTGCTCGATACCGGCGTCGACCGCGGCGACCGTACCGGGACAGGCAC-A 936 Query 196146 CGT-CCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACC 196204 ||| || | ||||| |||||||| ||||||||| | || || || | || Sbjct 935 CGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACG 876 Query 196205 ACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGAC 196264 || |||||||| ||||| |||||||| || || |||||||||||||| || || || Sbjct 875 ACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAA 816 Query 196265 ACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAA 196324 || |||||| || || || || ||||| || | |||||| | || ||||| |||| Sbjct 815 ACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAG 756 Query 196325 CTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || |||||||| || || | |||||||| Sbjct 755 AACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 718 >seq7603 Length=749 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 196781 TCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCG 196840 || || |||||||| ||||| || || || ||||||||||| || |||||||||||||| Sbjct 531 TCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGTTCAACATCGCC 590 Query 196841 TCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTC 196900 ||||| |||| | |||||| |||| || |||| | | ||||||||| Sbjct 591 AGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACGTCGGCGAGTTC 650 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAG 196960 || ||||| ||||| ||| |||||||||| ||||||| | || ||||| || ||| Sbjct 651 GTCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGGTGACCGAGCAG 710 Query 196961 CTGTCTCGTAAACCGAAAGCGTTGCCGACGCTG 196993 || || ||||| |||||||||| ||| Sbjct 711 CTCGGCCGCGAACCGCTGCCGTTGCCGACCCTG 743 Score = 113 bits (124), Expect = 7e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 196114 CGACAAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCAC-AGATGCGCT 196172 || |||| | || || ||||| || ||||| || |||| | ||| ||||||| | Sbjct 101 CGCCAAATCCGATCGAACCGGAACCGGCACC-CGCAGCATCTTCGGTCACCAGATGCGTT 159 Query 196173 TCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCA 196232 ||||||| ||||| || ||||| |||||||| ||||| |||| || || || Sbjct 160 TCGATCTTGCCGACGGCTTTCCGCTCGTCACCACCAAGAAGGTCCACCTCAAGTCGATAG 219 Query 196233 TTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACG 196292 | | ||||| ||||||||||| ||| ||| ||||| | || ||| | || ||| Sbjct 220 TCAACGAACTCCTGTGGTTCCTGCGCGGCGACTCCAACGTGGCGTGGCTGCACGAGCACG 279 Query 196293 GTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTA 196352 | ||||| |||||| |||||||||| |||| |||| | || || || || ||||| Sbjct 280 GCGTCTCCATCTGGGACGAGTGGGCCGACGAGAACGGTGAACTCGGCCCCGTCTACGGCG 339 Query 196353 AGCAGTGGCGT 196363 ||||||||| Sbjct 340 TCCAGTGGCGT 350 >seq362 Length=339261 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 196163 CAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTG 196222 |||||| | ||| | || || || || || || ||||||||||| || ||||| ||| | Sbjct 148550 CAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTA 148491 Query 196223 CGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTG 196282 ||||| || || |||||| | ||||| | | ||||||||||| || |||||| Sbjct 148490 AAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTG 148431 Query 196283 AATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCG 196342 || | ||| ||| |||||| | |||||||| | ||| |||| ||||||| || Sbjct 148430 AAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCT 148371 Query 196343 GTTTACGGTAAGCAGTGGCGTGAATGG 196369 ||||| || || |||||| |||| Sbjct 148370 GTTTATGGATCACAATGGCGTTCATGG 148344 >seq58 Length=338205 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || || | |||| ||||| || Sbjct 80789 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 80730 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || ||||||||||||||| ||||| || || || || |||| Sbjct 80729 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 80670 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| ||||||| ||||| ||||| |||||||| Sbjct 80669 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 80613 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 196808 GATATGTTCCTCGGTGTACCGTTCAACATCGCGTCTTACGCATTGCTGATTCACATGGTG 196867 ||| | |||||||| | |||| ||||| ||| | || ||||| | || ||| || Sbjct 80363 GATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACCCATATGCTG 80304 Query 196868 GCGCAACAGGTTAACATGGTACCGGGCGAGTTCGTTTGGACTGGCGGTGACGTCCACATC 196927 || || ||| || || | || |||| || | || || ||| |||| | Sbjct 80303 GCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGACACCCACGCC 80244 Query 196928 TACTCCAATCACATGGAACAGGTAGAAGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCG 196987 ||| ||| |||||||||||| | | |||||| | || | ||||| | ||||| Sbjct 80243 TACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAGAAGCTGCCG 80184 Query 196988 ACGCTGGTTATCAAACGCAAACCGGACAGTATCTTCGATTACAAATTCGAAGACTTCGAA 197047 ||||| ||||| |||||||| | |||| |||||||||||||||||| || ||| Sbjct 80183 GAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAAGATTTTGAA 80124 Query 197048 CTGGTAGGCTACGA 197061 | || ||||| || Sbjct 80123 ATCGTGGGCTATGA 80110 >seq3886 Length=850 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 554 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 495 Query 4266 CAGGGTCGCCACATTTT 4282 ||| | |||| ||||| Sbjct 494 CAGAGGAGCCAAATTTT 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771407331858600