Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5807 82.4 1e-10 seq1830 82.4 1e-10 seq165 82.4 1e-10 >seq5807 Length=961 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19530 TCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGAGT 19589 ||| || ||||||||| |||||||| || ||||||||||| || |||| ||||||||||| Sbjct 492 TCCCCTGTAGCTCAATTGGCAGAGCTTCCGACTGTTAATCGGACGGTTGCTGGTTCGAGT 551 Query 19590 CCAGGTGGAGGAG 19602 |||| || |||| Sbjct 552 CCAGCCGGGGGAG 564 >seq1830 Length=24667 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/92 (80%), Gaps = 11/92 (12%) Strand=Plus/Minus Query 165733 TGGAAGAGTGGCAGAGTGGTTGATTGCATCAGTCTTGAAAACT---GACGTGTTAGTAGC 165789 |||||| ||||| |||||||||| ||| |||||||||||||| |||| |||| | Sbjct 15171 TGGAAGCGTGGCCGAGTGGTTGAAGGCACCAGTCTTGAAAACTGGCGACGGGTTA----C 15116 Query 165790 AC----CGTGAGTTCGAATCTCACCTCTTCCG 165817 || ||||||||||||||||||| |||||| Sbjct 15115 ACTGTTCGTGAGTTCGAATCTCACCGCTTCCG 15084 >seq165 Length=230050 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19528 ATTCCTCTATAGCTCAATCGGCAGAGCATCTGACTGTTAATCAGAGGGTTCCTGGTTCGA 19587 ||||| | |||||||| | || |||||| ||||||||||||| |||| |||||||||| Sbjct 48885 ATTCCGCGATAGCTCAGTTGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCGA 48944 Query 19588 GTCCAGGTGGAGGAG 19602 |||||||| | |||| Sbjct 48945 GTCCAGGTCGTGGAG 48959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633968996370000