Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq400 174 5e-39 seq1320 102 2e-17 seq685 100 8e-17 seq833 96.9 1e-15 seq1321 93.3 1e-14 >seq400 Length=38681 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 7096 GATGCACAGCAAAGGGTTGATGCTGCGCGCAATGACGCTGTCAATGCTGCTGCTAAGTCT 7155 || || ||||| ||| | || ||||||||||| ||| | ||||||| ||| || Sbjct 33305 GAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGCT 33364 Query 7156 GGCAGGTTGCAGCAACAGCTCGCAAATATCCGCAAGCAGCTC-GTCGGATATTCCACCAC 7214 ||| |||||||||||||||||| ||||| |||||||| | | | ||| | |||| Sbjct 33365 GGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCAC 33423 Query 7215 TGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCAA 7274 | || ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 33424 TATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCAA 33483 Query 7275 ATCTGTCGAAAGAAATCGACAGCTGGCAGATTACGCTGACAGGGCAAGAGAAGCAGGATT 7334 |||| |||| |||| ||||| |||||||| ||||||||| |||| ||||| ||| Sbjct 33484 ATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGACG 33543 Query 7335 AGCGTGTGAGGCGCAGTACAATTCGCTG 7362 || ||||| ||||||| |||||||| Sbjct 33544 AGTCTGTGAAAAGCAGTACGATTCGCTG 33571 >seq1320 Length=7270 Score = 102 bits (112), Expect = 2e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 33670 GTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATT 33729 ||||| | ||||||||| | || || || | ||| || | ||||| || ||||| | | Sbjct 6229 GTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACT 6170 Query 33730 TCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCA 33789 || ||||||||||| || | || ||||| |||||||| || |||||| |||| || Sbjct 6169 TCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCT 6110 Query 33790 GTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCA 33849 || || ||| ||| | |||||| || || || | ||| || || ||||| || Sbjct 6109 GTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTGCGCCCCCG 6050 Query 33850 TTTGGCATGTATCGCACTTCTGGGTC 33875 || || ||||| || ||||| || || Sbjct 6049 TTGGGGATGTAACGGACTTCCGGATC 6024 >seq685 Length=77197 Score = 100 bits (110), Expect = 8e-17 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 33703 CCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGC 33762 ||||| | ||||||||||| || ||||| |||| |||||| |||| |||||||||||| Sbjct 10768 CCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGC 10709 Query 33763 CATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGAT-GTAGC 33821 || || || |||||| | || || || |||||| ||||| | || || | || || Sbjct 10708 CACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCA-GCTTTCGCTGGTGGC 10650 Query 33822 AACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCC 33881 | | || ||| | || ||| ||| || || |||| || ||||| ||||| ||| Sbjct 10649 CAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCGCC 10590 Query 33882 TAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCAT 33926 |||||| || || ||||| || ||||| || |||||| Sbjct 10589 GGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCG---TGCCAT 10548 >seq833 Length=8904 Score = 96.9 bits (106), Expect = 1e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 33678 CTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAG 33737 || |||||| | || || || || ||||||| |||||||||||||| |||||||||| Sbjct 8484 CTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGAC 8425 Query 33738 CTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTT 33797 || ||||| | | || ||||||||||| || | || ||||| || || ||| Sbjct 8424 TTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTT 8365 Query 33798 ATCATTCCATGATTCCGATGTAGCAA--CAGATACGTTGGCAACAGCGCCGCCATTTGGC 33855 ||| |||| || ||| |||| | || | |||| || || || || || Sbjct 8364 GTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGA--TTGGTTACTGCATTACCGTTCGGT 8307 Query 33856 ATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCG 33915 | ||| || |||||| || || || | ||||| | | ||| ||||||||||||||| Sbjct 8306 AAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGATCACTTTATTTACGCCG 8247 Query 33916 CGAG 33919 |||| Sbjct 8246 CGAG 8243 >seq1321 Length=3862 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33691 TAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATA 33750 || || || | ||| || | ||||| |||||||| | ||| ||||||||||| || | Sbjct 2824 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 2765 Query 33751 ACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGAT 33810 || |||||||||||||| || |||||| |||| || || || ||| ||| | Sbjct 2764 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 2705 Query 33811 TCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCT 33870 || ||||| || || | ||| || || ||||| || || || ||||| || ||||| Sbjct 2704 TCTGATGTGGCCACCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCC 2645 Query 33871 GGGTCCTGGCC 33881 || || | ||| Sbjct 2644 GGATCATTGCC 2634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144948689664240