Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq114 93.3 2e-13 seq583 91.5 6e-13 >seq114 Length=173045 Score = 93.3 bits (102), Expect = 2e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 364411 CTCCATGAGCTTACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTC 364470 ||| ||||||| ||||||||||||||||| ||||| | | ||||||| | | ||| || Sbjct 20412 CTCAATGAGCTGTCCAATAGTCATACGAGATGGAATAGCGTGAGGGTTTACAACGATATC 20353 Query 364471 AGGCACCATGCCGTCAGCGGTAAAGGGCATATCTTCGGGAGGAACGATGAGACCAATGGT 364530 ||||| || || || |||| |||||| ||| || || | | | | |||| || Sbjct 20352 TGGCACGATACCCTCGACGGTCCAGGGCAGATCCTCTTGACGGTAGGTCATACCACAAGT 20293 Query 364531 TCCCTTTTGCGCATAGCGAGAAGCAAACTTGTCGCCAAT 364569 ||||||||| | | || |||| |||||||| ||||| Sbjct 20292 TCCCTTTTGTCCGTGACGTGAAGAGAACTTGTCACCAAT 20254 >seq583 Length=42046 Score = 91.5 bits (100), Expect = 6e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 159424 AGAGGTAAACTTTGGAATAATCTTTTCTGGATACTGGTAAGGACCGTAGACATTGTTACA 159483 |||| |||||||||||| ||||||||| ||||||||| ||| ||| ||||||||||| | Sbjct 12939 AGAGATAAACTTTGGAACAATCTTTTCAGGATACTGGAAAGCACCATAGACATTGTTGCC 12880 Query 159484 ACGGGTGATGATTACGGGAAGAGAGAAGGAGAGACGATAAGAACTGGCCAAG-AGTTCTG 159542 ||| || || || | ||||||| || || | || | | || | || || || | Sbjct 12879 ACGTGTAATAATGATGGGAAGATTAAATGATTTGAGGTATG-ATTGTACGAGTAGCTCGG 12821 Query 159543 CTCCTGCCTTGCTGGCCGCATAAGGGTTAGTGGG 159576 |||| |||||||| || | ||| || || || || Sbjct 12820 CTCCAGCCTTGCTTGCTGAATAGGGATTGGTTGG 12787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884548177751465