Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq1569 132 9e-29 seq2 77.0 6e-12 seq1407 73.4 8e-11 >seq1569 Length=2469 Score = 132 bits (146), Expect = 9e-29 Identities = 150/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 ||||| ||||||| |||||||||||| ||||| ||||||| || ||||||||| Sbjct 1629 CTACAGCCTTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACA 1688 Query 189 TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGG 247 || | | | | |||| |||||| ||||| || | |||||| | || || ||||| Sbjct 1689 TCGCAGTTATAAAAAGTACTGGAATATTAACCAGTTGT-CCATCGAATATC-CCTTTCGG 1746 Query 248 CTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCT 307 | ||||| | ||||||| |||||||||||||||||| |||||||||||||||| || Sbjct 1747 GTTCTCCTTAGGTCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCT 1806 Query 308 TTCGGCGAGGGGGTTTC 324 ||||| | | |||||| Sbjct 1807 TTCGGTGGGCAGGTTTC 1823 >seq2 Length=124989 Score = 77.0 bits (84), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||| |||| |||| ||||| ||| | | ||||| || ||||||| | || | | Sbjct 4274 CTTCAACCTCGTATTTCGTCACGAGGCAGACCTTTCACTTCTTCGTCCCCCCTTCTCTAT 4333 Query 196 CAAATG-TAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACC 254 | | ||||| ||||||| |||||| || | |||||| | |||| ||||||| | | Sbjct 4334 TATTAGCTAGTATCGGAATATTAACCGATTGT-CCATCGCTTACGCCTTTCGGCTACAGC 4392 Query 255 TTATGACCCGACTTACCCT--GATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312 ||| | |||||| |||| ||| || |||| | |||||||||||| |||||| Sbjct 4393 TTAGGCTCCGACTAACCCACGGAT--GACTAGCATAGCCGTGGAAACCTTAGTTTTTCGG 4450 Query 313 CGAGGGGGTTTCCCACC 329 | | ||||||||||| Sbjct 4451 TGTGTTGGTTTCCCACC 4467 >seq1407 Length=3311 Score = 73.4 bits (80), Expect = 8e-11 Identities = 95/130 (73%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | |||||| ||| ||| || ||||| | | Sbjct 1564 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 1506 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| ||| Sbjct 1505 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 1446 Query 323 TCCCACCCCC 332 | ||| ||| Sbjct 1445 TTTCACACCC 1436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959925369600