Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1569 214 3e-53 seq2 206 5e-51 seq1755 205 2e-50 seq1407 140 6e-31 >seq1569 Length=2469 Score = 214 bits (236), Expect = 3e-53 Identities = 157/183 (86%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 154 GAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTA 213 ||||||||| || || |||||| ||| | || | ||||||||||||||||||||||| Sbjct 2469 GAAAGCGAGTCTGAATAGGGCGTATAGTCAGGGGAGGTAGACGCGAAACCTTGTGATCTA 2410 Query 214 CCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGA 273 |||| | |||||||||| |||||||| ||| ||||||||||||||| |||||||||| Sbjct 2409 CCCATGGACAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCGATAAACGTTGA 2350 Query 274 AAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCG 333 ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||| Sbjct 2349 AAAGTTTCCGGATGATCTGTGGGTAGGGGTGAAAGGCTAATCAAACTGGGAAATAGCTCG 2290 Query 334 TAC 336 ||| Sbjct 2289 TAC 2287 >seq2 Length=124989 Score = 206 bits (228), Expect = 5e-51 Identities = 252/337 (75%), Gaps = 19/337 (6%) Strand=Plus/Minus Query 13 GGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC---GAGTGATTC 69 ||| |||||| || |||||| || ||| |||||||||||||||| | | || | Sbjct 5266 GGGAGTGAAA-AGTTCCTGAAACCATACGCTTACAAGCGGTCGGAGCTTCTGGTTTATAC 5208 Query 70 G-----GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGG 124 ||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 5207 CATGAAGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCTTCTTTGGCAAGG 5148 Query 125 TTAAGGGCTTC----AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAG 180 |||| ||| ||| | |||||||| ||||||||| || || |||||| || Sbjct 5147 TTAATC-CTTATAAGAGGAGC---AGCCGAAGCGAAAGCGAGTCTGAATAGGGCGTTAAG 5092 Query 181 TTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC-GGTA 239 | | |||||||||||||||| |||||||||||| | |||| ||||| ||| |||| Sbjct 5091 TCATAGAAGCTAGACGCGAAACCTGGTGATCTACCCATGGCCAGGCTGAAG-CGCTGGTA 5033 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 | | |||||| |||||| ||| | |||| || | |||||||| | |||||| Sbjct 5032 AAACAGCGTGGAGGGCCGAACTGGTGGATGTTGCAACATCCTCGGATGAGCTGTGGGTAG 4973 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||| |||||||| ||||||||||||||| Sbjct 4972 GGGTGAAAGGCTAATCAAACCAGGAAATAGCTCGTAC 4936 >seq1755 Length=4651 Score = 205 bits (226), Expect = 2e-50 Identities = 250/337 (74%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||| ||| |||||| ||| |||||||| | || |||||| Sbjct 2872 CCCGACAAGGGGAGTGAAAGAGATCCTGAAACCGAATGCCTACAAACAGTTGGAGCCCAA 2813 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| |||||| |||| ||||||| |||||| | | ||| |||||| | || | Sbjct 2812 GATTTGTTCTGGGTGACAGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTC-TGACGA 2754 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 || || |||| | || || ||| || || ||||||||| || ||||||||| Sbjct 2753 GCAAGCTTAAA-----CCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTT 2699 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| || | ||||| ||||||| |||||||| ||| ||||||||||||| || Sbjct 2698 CAGTTCGTCGGATTAGACCCGAAACCAAGTGATCTAGCCATGAGCAGGTTGAAGGTAAGG 2639 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| | | |||||||||||||| | | |||| || || |||||||| | || | Sbjct 2638 TAACACTTACTGGAGGACCGAACCCGCATCTGTTGCAATAGATTGGGATGACTTGTGGCT 2579 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||| ||| |||||| || Sbjct 2578 AGGGGTGAAAGGCCAATCAAACTTGGAGATAGCTGGT 2542 >seq1407 Length=3311 Score = 140 bits (154), Expect = 6e-31 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 || || || ||||||||| ||||| |||||| | ||| | ||| ||||| ||||||| Sbjct 781 AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCG 840 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 | |||||| ||| | ||||||||||| |||||| | ||||||||||||||| Sbjct 841 GGCGATCTATCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGAC 900 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 | |||||||||||| |||||||| | || | || ||||||||| |||||| || ||| Sbjct 901 TACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGA 960 Query 325 AATAGCTCGT 334 |||||| || Sbjct 961 GATAGCTGGT 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972724374528