Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4399 154 6e-35 seq116 123 1e-25 seq5551 86.0 3e-14 >seq4399 Length=1807 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1454 AGAGCGTATGCGTTGAGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGCCAGA 1513 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||||| | |||||| Sbjct 1514 GGAAACTCTGGTGGAAGTCCGAATCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGT 1573 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1574 ATAGGGGCGA 1583 Score = 116 bits (128), Expect = 2e-23 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||||| || ||||| | || || |||||| ||| |||| |||||| Sbjct 713 GAGTCGGGTTGTTTGGAAACGCAGCCCAAAGAAGGTGGTAAACTTCACCTAAGACTAAAT 772 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||| ||||||| |||| ||||| |||||||||||||| | Sbjct 773 ATCACTACGAATCCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTTTGAAG 832 Query 160 AGAGAGTTAAAAAGCACGTGAAAT 183 ||||||||||| |||||||||||| Sbjct 833 AGAGAGTTAAAGAGCACGTGAAAT 856 Score = 78.8 bits (86), Expect = 4e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||| |||| | || |||||| ||||||| | | Sbjct 1271 CGACCCGTCTTGAAACACGGACCAAGGAGTTTAACGTATACGCGAGTCATTGGGTGATAA 1330 Query 464 AACCCGTGCGCGTAATGAAAGTGAA 488 |||| ||||||||||||| || Sbjct 1331 AACCTAAAGGCGTAATGAAAGTAAA 1355 >seq116 Length=14452 Score = 123 bits (136), Expect = 1e-25 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||| ||| |||||| | | ||||||||||| ||||||||||| | ||| | | Sbjct 6243 GGATTCGAGGTAGAGCACATAAAATAGGACCCGAAAGGTGGTGAACTATACTTGAGGAAG 6184 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||| || || | ||| ||||||||||| | || Sbjct 6183 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTTGCCGCAATGCTGACGTGCAAATCGCTTGT 6124 Query 663 CAAATTTGGGTATAGGGGCGA 683 | || ||| |||||||||||| Sbjct 6123 CTAACTTGAGTATAGGGGCGA 6103 Score = 84.2 bits (92), Expect = 9e-14 Identities = 121/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||| | ||| || | |||| ||| || ||| | ||| ||| || || | Sbjct 6971 TTCCACGAGTAGGAATGTCTGAAATTGCAT-TCTGAAAGGGTGATAAGATTCATCCAAGG 6913 Query 94 CTAAATATTGGCCAG-AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| | || ||||||||||| |||||||| |||| ||||| ||||||| || Sbjct 6912 CTAAATATAAGTTAGGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAAC 6853 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| ||| || ||| ||||| | ||| | ||| | ||||||| Sbjct 6852 TTTGAAAAAAG-GTTTAAAAGTATTTGACACCGTTTATGTGGAAGCG 6807 >seq5551 Length=667 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||| |||||| |||||| | | ||||||||||| ||||||||||||||||| | Sbjct 107 ATGGGTTTGAGGTAGAGCACACAGAATAGGACCCGAAAGTTGGTGAACTATGCCTGAGGA 48 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 || |||| ||| |||||||||| |||||||| Sbjct 47 AGGCGAAGTCAGGGGAAACTCTGATGGAGGCT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079833247700