Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1857 140 3e-31 seq2 140 3e-31 seq1755 89.7 5e-16 >seq1857 Length=1661 Score = 140 bits (154), Expect = 3e-31 Identities = 139/179 (78%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| || | |||||||| ||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 485 GCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGC 426 Query 62 TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT 121 | |||||||| ||| ||| ||||| ||||| |||| ||||||||||| |||| | | Sbjct 425 TCCGGGGATTAGCAAATATGAATTAATCCGGAGATTTCCGAATGGGGAAACCTGGCTAGT 366 Query 122 TGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || || | | | || || ||| || ||||||||||||||||||| Sbjct 365 TGAAGACTAGTCGTA---CAAAG---TACGCAAACCTGCTGAACTGAAACATCTAAGTA 313 >seq2 Length=124989 Score = 140 bits (154), Expect = 3e-31 Identities = 136/172 (79%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 13 ATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTG 72 |||||| ||||||| ||||||| ||||||||||| || |||||| ||||| ||||||||| Sbjct 5763 ATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGACAAACTGCGATAAGCTGCGGGGATTG 5704 Query 73 GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGATATAT 132 | |||| |||||||||| |||| |||||||||||||||| || | || || | || Sbjct 5703 GTTAATACAAATTGATCCGCAGATTTCCGAATGGGGCAACCTAATCCAATGAAGTTGGAT 5644 Query 133 CATAACGCTAGGCGTTAG----GCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | || | ||| |||||| ||||||||||||||||||||||| Sbjct 5643 -TTATCTCT-GTTTATAGAGAAGCGAACCTGGGGAACTGAAACATCTAAGTA 5594 >seq1755 Length=4651 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| ||||||| |||| |||| Sbjct 3506 GGTGGATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCGTCGGG 3447 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || |||| |||||||| ||| ||||||||||| ||||| Sbjct 3446 GAGGTGCGAATACCCTTTGATCCGACGATTTCCGAATGGGGAAACCC 3400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476764091894