Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1407 183 4e-44 seq1755 172 8e-41 seq2 147 3e-33 seq1569 116 5e-24 >seq1407 Length=3311 Score = 183 bits (202), Expect = 4e-44 Identities = 192/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 2013 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1955 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || | ||| ||||| || |||| | Sbjct 1954 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 1895 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| |||||| || ||| | ||||||||||||||||||| ||||||||||| Sbjct 1894 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 1835 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 1834 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCACCTGTGTC 1775 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 1774 GGTTTGGGGTA 1764 >seq1755 Length=4651 Score = 172 bits (190), Expect = 8e-41 Identities = 189/249 (76%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| || ||||||| Sbjct 1603 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTT-GCGACTTCGCAG 1661 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||||| ||| || ||| ||| ||| ||| Sbjct 1662 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCAC------- 1714 Query 121 ACACGT-CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || | ||| || || || | ||||| ||||||||||| | || |||||||| Sbjct 1715 ATACTTGCGTACATAAG----GGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGA 1770 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | | |||||| | | | |||||| |||||||||||| | ||||| ||||||| Sbjct 1771 GTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCAGTGTCGG 1830 Query 240 TTTACGGTA 248 |||| |||| Sbjct 1831 TTTAGGGTA 1839 >seq2 Length=124989 Score = 147 bits (162), Expect = 3e-33 Identities = 184/248 (74%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||| || ||||| | ||| | | || ||| Sbjct 3895 CTTAACCTTCCAGCACCGGGCAGGTATCAGGCCTTATACTTTATCTTTCGATTTT-GCAA 3953 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||||||| | || ||| |||||||| | ||| Sbjct 3954 AGCCCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTTTTCACTGCGACCTCTCTT---TCA 4010 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || | || || | ||||||| |||| |||||||||| |||| | |||||||| Sbjct 4011 TC-CGAAGA-CAAAAGAGGAGGCACCCTTTCTTCCGAAGTTACAGGGCAAATTTGCCGAG 4068 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||||| || |||| ||||| |||||| ||||||| | || |||||||||||| Sbjct 4069 TTCCTTAATCAAGAATCACTCGAACACCTTAGGATTCTCTCCTCAACTACCTGTGTCGGT 4128 Query 241 TTACGGTA 248 |||||||| Sbjct 4129 TTACGGTA 4136 >seq1569 Length=2469 Score = 116 bits (128), Expect = 5e-24 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 || ||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||| | Sbjct 1392 GCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTC 1451 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | |||||| ||||||| || | |||||||||||||| ||||| Sbjct 1452 GAGCACCTTAGAATTCTCTTCCCGGATACCTGTGTCGGTTTGCGGTA 1498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694347704302