Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-25 seq1569 102 9e-20 seq1407 86.0 7e-15 seq1755 82.4 8e-14 seq6455 75.2 1e-11 >seq2 Length=124989 Score = 120 bits (132), Expect = 3e-25 Identities = 146/201 (73%), Gaps = 15/201 (7%) Strand=Plus/Minus Query 8 GCTATCCGAGGGAGCGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGA 67 |||||||| | || |||| |||||| ||||| | | || || |||||| | | || Sbjct 4144 GCTATCCGT---ACCGTAAACCGACACAGGTAGTTGAGGAGAGAATCCTAAGGTGTTCGA 4088 Query 68 GTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT 127 |||| || | |||||||||| |||||| | |||||||||||||| | ||||||| ||| Sbjct 4087 GTGATTCTTGATTAAGGAACTCGGCAAATTTGCCCTGTAACTTCGGAAGAAAGGGTGCCT 4028 Query 128 ACCC------------AGAAATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAAC 175 | | | || | |||| ||||| ||| ||| |||||| |||||||| | Sbjct 4027 CCTCTTTTGTCTTCGGATGAAAGAGAGGTCGCAGTGAAAAGGCCCAGGCGACTGTTTACC 3968 Query 176 AAAAACACAGGGCTGTGCCAA 196 |||||||||||||| ||| || Sbjct 3967 AAAAACACAGGGCTTTGCAAA 3947 >seq1569 Length=2469 Score = 102 bits (112), Expect = 9e-20 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || || Sbjct 1495 CGCAAACCGACACAGGTATCCGGGAAGAGAATTCTAAGGTGCTCGAGTGAATCATGGCTA 1436 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 ||||||| |||||| || |||||||||||||||| || ||| Sbjct 1435 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGAGAAGGGG 1395 >seq1407 Length=3311 Score = 86.0 bits (94), Expect = 7e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || |||| || |||| |||||||||||| ||| ||| ||| Sbjct 1769 CAAACCGACACAGGTGGTTGGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 1828 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | | |||||||||||| || Sbjct 1829 GAACTAGGCAAAATGGCACCGTAACTTCGGGAGAA 1863 >seq1755 Length=4651 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| ||||| || | | ||| || |||| |||||||||||| ||| || | |||| Sbjct 1833 AAACCGACACTGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACTGCGTTGAAGG 1774 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 |||| |||||| || | |||||||||| | || | | ||| ||| || ||| Sbjct 1773 AACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCTTATGTACGCAAGTATG 1714 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| ||| ||| ||| || |||||||| ||||||||||||||| ||| || Sbjct 1713 TGAGGGTGGCACAGACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAA 1655 >seq6455 Length=374 Score = 75.2 bits (82), Expect = 1e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| |||| ||||| |||||| | |||| || ||| | ||| | Sbjct 10 AAGGAACTCGGCAAAATGACTCTGTATCTTCGGTAGAAAGAGTGCCTTTTTAAAAA-GAA 68 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| | |||| || ||| || ||||||||||||||||||||| || ||| || Sbjct 69 AGGCCACAGAAAAGAGGGGGTAGCGACTGTTTAACAAAAACACAGGACTCTGCAAA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531159994996