Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1407 246 3e-63 seq1755 102 8e-20 seq2 78.8 9e-13 >seq1407 Length=3311 Score = 246 bits (272), Expect = 3e-63 Identities = 138/139 (99%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1881 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 1940 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1941 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 2000 Query 140 GCCGGAAGGTTAATTGATG 158 ||||||||||||||||||| Sbjct 2001 GCCGGAAGGTTAATTGATG 2019 >seq1755 Length=4651 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | ||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 1699 ACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 1640 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 1639 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 1604 >seq2 Length=124989 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || | ||||| ||||||||||| |||||||||| || |||||| ||| Sbjct 4001 GGTCGCAGTGAAAAGGCCCAGGCGACTGTTTACCAAAAACACAGGGCTTTGCAAAATCGA 3942 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||||| || ||| |||||||||||| |||||||||| Sbjct 3941 AAGATAAAGTATAAGGCCTGATACCTGCCCGGTGCTGGAAGGTTAA 3896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476764091894