Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1407 755 0.0 seq1755 334 2e-89 seq2 237 4e-60 seq6 141 2e-31 seq1569 82.4 2e-13 >seq1407 Length=3311 Score = 755 bits (836), Expect = 0.0 Identities = 423/426 (99%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2207 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 2148 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2147 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 2088 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2087 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 2028 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2027 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 1968 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1967 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 1908 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1907 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 1848 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1847 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 1788 Query 421 AACCAC 426 |||||| Sbjct 1787 AACCAC 1782 >seq1755 Length=4651 Score = 334 bits (370), Expect = 2e-89 Identities = 320/408 (78%), Gaps = 25/408 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||||||||||| | ||||||||||| | ||||| Sbjct 1431 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTT 1490 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1491 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1550 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | |||||||||||||||||| ||||||||||| | ||||| || ||| | | Sbjct 1551 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAAAGCTT-GC--------ACCTCTCC 1601 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 1602 TCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTTCGCAG 1661 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| | |||||| | | | ||| || ||| Sbjct 1662 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACATACTTG 1721 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG-GTGCCTTTTTG 371 | || | | | |||| ||||| ||||||||||| ||| | |||| Sbjct 1722 C-------GTACATAAGGGTCAC-------GCTTCTTCCGAAGTTACGCGTG-CAATTTG 1766 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 || ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1767 CCGAGTTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 1814 >seq2 Length=124989 Score = 237 bits (262), Expect = 4e-60 Identities = 236/302 (78%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGG-TGGAGACAGC 60 |||| || | |||||||||| || | | ||||||||| ||| ||| | | ||||||| Sbjct 3701 GCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCGAG-CTCTTGATTGAGACAGT 3759 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3760 GCCCAAGTCGTTAAACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 3819 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG--CGT 178 |||||||||| || |||||||||||||||||| |||||||| || | |||| | || Sbjct 3820 TTAGGACCGTCATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAATGCTTTGTCCGA 3879 Query 179 TAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 | ||||| | | |||||||||| |||||||||||| ||| || ||||| | | Sbjct 3880 AAACTAACATCTCCTCTTAACCTTCCAGCACCGGGCAGGTATCAGGCCTTATACTTTATC 3939 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 ||||| |||||| || |||||||||| ||||||||||| ||||| | || ||| Sbjct 3940 TTTCGATTTTGCAAAGCCCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTTTTCACTGCGA 3999 Query 299 CC 300 || Sbjct 4000 CC 4001 >seq6 Length=53452 Score = 141 bits (156), Expect = 2e-31 Identities = 193/266 (73%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 |||||||| | ||| |||||||| |||| ||||||||| | ||||||| Sbjct 8377 ATCTTCACGGAAATTCCAATTTCATTGAGATAATATTGGAGACAGTAGGGAGGTCGTTAC 8318 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 |||||| |||| ||| || |||| ||||||||||||||||||||| ||||||| || Sbjct 8317 ACCATTCATGCACGTCAAAAATTACTTGACAAGGAATTTCGCTACCTTTGGACCGTCATG 8258 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAA 194 ||||| |||||||||||| ||| |||| || | | ||| | | | | || | Sbjct 8257 GTTACAGCCGCCGTTTACTGGGACTTCAATTCAAAACTT----TCA--TTTCTCCTT--- 8207 Query 195 TTAACCTT-CCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 || | ||| | |||||||||||| ||| | ||||||| || || | |||||||| Sbjct 8206 TTCATCTTGTCAGCACCGGGCAGGTATCAGATCCTATACATCATATTACTATTTTGCAGA 8147 Query 254 GTGCTGTGTTTTTAATAAACAGTCGC 279 | |||||||||| ||||||||||| Sbjct 8146 ATCCTGTGTTTTTGTTAAACAGTCGC 8121 >seq1569 Length=2469 Score = 82.4 bits (90), Expect = 2e-13 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| ||| | || ||||||| | || ||||||||| ||| ||| || |||||||| Sbjct 1088 GCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGAG-CTCATGGCTGAGACAGC 1146 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 97 ||| |||||||| |||||||||||||||||||||| Sbjct 1147 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTT 1183 Score = 77.0 bits (84), Expect = 8e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTC 393 ||| |||| ||||||||||||||||| | ||| ||||||| |||||||| || ||| Sbjct 1388 ACCAGCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTC 1447 Query 394 TCTCAAGCGCCTTGGTATTCTCTACCC 420 ||| ||| |||| | ||||||| ||| Sbjct 1448 ACTCGAGCACCTTAGAATTCTCTTCCC 1474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260701985408