Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2 349 7e-94 seq1755 315 2e-83 seq1407 268 2e-69 seq6 201 2e-49 seq6455 134 3e-29 seq4705 127 4e-27 seq1569 105 1e-20 >seq2 Length=124989 Score = 349 bits (386), Expect = 7e-94 Identities = 299/368 (81%), Gaps = 20/368 (5%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTG-TTGAGACAGTGCCCAAATC 63 |||||||||||||| | ||||||||||||||| || ||| |||||||||||||||| || Sbjct 3710 CGGCATCTTCACCGCTACTACAATTTCACCGAG-CTCTTGATTGAGACAGTGCCCAAGTC 3768 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3769 GTTAAACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 3828 Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTG--CTCTAACA 181 | ||||||||||||||||||||||||||||| | |||| ||||| | | |||||| Sbjct 3829 TCATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAATGCTTTGTCCGAAAACTAACA 3888 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| |||||||||||||||||||||||| |||| | ||||| | |||| ||| || Sbjct 3889 TCTCCTCTTAACCTTCCAGCACCGGGCAGGTATCAGGCCTTATACTTTATCTTTCGATTT 3948 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT- 300 ||| | |||||||||||||||||||||||| ||||||| ||| ||||| ||| || | Sbjct 3949 TGCAAAGCCCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTTTTCACTGCGACCTCTCTTT 4008 Query 301 -------AGAC--------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 |||| |||||||| |||| || ||||||| ||| | ||||||||| Sbjct 4009 CATCCGAAGACAAAAGAGGAGGCACCCTTTCTTCCGAAGTTACAGGGCAAATTTGCCGAG 4068 Query 346 TTCCTTAA 353 |||||||| Sbjct 4069 TTCCTTAA 4076 >seq1755 Length=4651 Score = 315 bits (348), Expect = 2e-83 Identities = 295/374 (79%), Gaps = 20/374 (5%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||| | ||||||| | || Sbjct 1426 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTGCGTTGGAGACAGCGGGGAAG 1485 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1486 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1545 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||||||||||| |||| || |||| || Sbjct 1546 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATTCAAAGC-----TTGC----ACC 1596 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1597 TCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGCGACTT 1656 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG-CGGCCTGTCAT 300 ||||| ||||||||||||||||||||||||| ||| ||| || | ||| ||| Sbjct 1657 CGCAGAGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCACAT 1716 Query 301 A------GACA----GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 | ||| || | ||||| || |||||||| | || |||||||||||||| Sbjct 1717 ACTTGCGTACATAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAGTTCCT 1776 Query 351 TAACAATAGTTCTC 364 | | ||||||| Sbjct 1777 TCAACGCAGTTCTC 1790 >seq1407 Length=3311 Score = 268 bits (296), Expect = 2e-69 Identities = 291/390 (75%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 2201 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 2142 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2141 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2082 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| | ||||| Sbjct 2081 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 2022 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 2021 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 1962 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | ||| Sbjct 1961 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 1903 Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || ||| | ||||||||| ||||||||| | | Sbjct 1902 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 1843 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||| |||||||| || ||||||| Sbjct 1842 ATTTTGCCTAGTTCCTTCACCCGAGTTCTC 1813 >seq6 Length=53452 Score = 201 bits (222), Expect = 2e-49 Identities = 264/367 (72%), Gaps = 28/367 (8%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | ||| |||||||| ||| || | |||||||| | ||||||| Sbjct 8377 ATCTTCACGGAAATTCCAATTTCATTGAGATAATATTGGAGACAGTAGGGAGGTCGTTAC 8318 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| ||| || |||| ||||||||||||||||||||| ||||||| || Sbjct 8317 ACCATTCATGCACGTCAAAAATTACTTGACAAGGAATTTCGCTACCTTTGGACCGTCATG 8258 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC 188 ||||| |||||||||||||||| ||| | |||| ||| ||| | ||| Sbjct 8257 GTTACAGCCGCCGTTTACTGGGACTTCAATTCAAAACTTTCATTTC---------TCCTT 8207 Query 189 TTAACCTT-CCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 || | ||| |||||||||||||| |||| ||||||||||| | || | | || ||||| Sbjct 8206 TTCATCTTGTCAGCACCGGGCAGGTATCAGATCCTATACATCATATTACTATTTTGCAGA 8147 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCATAGA--- 303 | |||||||||||| ||||||||||| || || |||| ||||| ||| | Sbjct 8146 ATCCTGTGTTTTTGTTAAACAGTCGCCACCCTCTCTTTTCTGTGGCCTAAAAATAAAATT 8087 Query 304 ------------CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 |||||| |||| |||| ||||||||| |||||||||||||||||||| Sbjct 8086 TTAACTTTATTTAAGGCACTCCTTATCCCGAAGTTACGGAGTCATTTTGCCGAGTTCCTT 8027 Query 352 AACAATA 358 ||||| Sbjct 8026 --CAATA 8022 >seq6455 Length=374 Score = 134 bits (148), Expect = 3e-29 Identities = 129/164 (79%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 198 CAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTT 257 |||||||||||||| |||| |||||||||| | |||| | || ||||| |||||||| Sbjct 166 CAGCACCGGGCAGGTATCAGACCCTATACATCATGTTGCCATTTTGCAGAGTCCTGTGTT 107 Query 258 TTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC---ATAGACAGGCACCCCT 314 |||| |||||||||||| ||| || |||| ||||| || || | |||||| | | Sbjct 106 TTTGTTAAACAGTCGCTACCCCCTCTTTTCTGTGGCCTTTCTTTTTAAAAAGGCACTCTT 47 Query 315 TCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATA 358 ||| || ||| ||| | |||||||||||||||||||| ||||| Sbjct 46 TCTACCGAAGATACAGAGTCATTTTGCCGAGTTCCTT--CAATA 5 >seq4705 Length=438 Score = 127 bits (140), Expect = 4e-27 Identities = 173/241 (72%), Gaps = 19/241 (8%) Strand=Plus/Minus Query 126 ATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC 185 || ||||| |||||||||||||||| ||| | |||| ||| ||| ||| Sbjct 436 ATGGTTACAGCCGCCGTTTACTGGGACTTCAATTCAAAACTTTCATTTCTC--------- 386 Query 186 CCCTTAACCTTC-CAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | || | ||| |||||||||||||| |||| ||||||||||| | || | | || || Sbjct 385 CTTTTCATCTTGTCAGCACCGGGCAGGTATCAGATCCTATACATCATATTACCATTTTGC 326 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT---- 300 |||| ||||||||||| ||||||||||| | | || ||| | ||| |||| Sbjct 325 AGAATCCTGTGTTTTTATTAAACAGTCGCCACCCCTTCTTTACTGTGACCT-TCATTTTT 267 Query 301 ----AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | | |||| | ||||||||| |||||||| || ||||||||||||||||| | || Sbjct 266 TACAACAAAGGCTCTCCTTCTCCCGCAGTTACGGAGTTATTTTGCCGAGTTCCTTCAGAA 207 Query 357 T 357 | Sbjct 206 T 206 >seq1569 Length=2469 Score = 105 bits (116), Expect = 1e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 |||||||| |||||||||||| |||||||||||||| || | |||||||| ||||| Sbjct 1093 TACCCGGCGTCTTCACCGGGACCACAATTTCACCGAGCTCATGGCTGAGACAGCGCCCAG 1152 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTT 91 |||||||| || ||||||| ||||||||||| Sbjct 1153 ATCGTTACACCATTCGTGCAGGTCGGAACTT 1183 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/86 (83%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 269 GTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG--ACAGGCACCCCTTCTCCCTAAGTT 326 ||||| ||||||| ||| ||||||| || || | || || ||||||||||| ||||| Sbjct 1353 GTCGCCTGGGCCTTTTCACTGCGGC-TGATATTGCTACCAGCGCCCCTTCTCCCGAAGTT 1411 Query 327 ACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||| ||||||||||||||||||| Sbjct 1412 ACAGGGCCATTTTGCCGAGTTCCTTA 1437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062317409024