Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq54 370 3e-100 seq1857 349 1e-93 seq1755 178 4e-42 seq5313 111 5e-22 seq6 107 6e-21 seq606 96.9 1e-17 >seq54 Length=99412 Score = 370 bits (410), Expect = 3e-100 Identities = 391/505 (77%), Gaps = 21/505 (4%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 13562 TACGCCCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGTCCGCACAAGCGGTGGAGCAT 13503 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| |||||||||| || || | |||| ||| Sbjct 13502 GTGGTTTAATTCGATAGTCCGCGAGGAACCTTACCTGGGCTAGAATGCTTCTGCTACCTT 13443 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 ||| || |||| || ||||| |||||||| || ||||| ||||||| |||||||| Sbjct 13442 GAGAAATCGAGGGTT--CCTTC--GGGACAGAATGCAAGGTGCTGCATGGCCGTCGTCAG 13387 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| |||||| |||||||||||||||| |||||||||||||| | ||||||||| Sbjct 13386 CTCGTGCCGTGAGGTGTTGGGTTAAGTCCCATAACGAGCGCAACCCCTTTACTTAGTTGC 13327 Query 241 CATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || | | ||| | ||| ||||||||| |||||| ||| || | ||||||||| |||| Sbjct 13326 CAGCGTGTAATGACGGGGACTCTAAGTATACTGCCTGTG-TAAGCAGGAGGAAGGAGGGG 13268 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | || |||| |||||||| | |||| | ||||||||||||||||||||||| | Sbjct 13267 ATGAGGTCAGGTCATCATGGCTCTTACGCCCAGGGCTACACACGTGCTACAATGGCGTGT 13208 Query 359 ACAAAGGGCAGC------GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGT 412 ||| | || || | ||| || | |||||||||| |||| ||||||| Sbjct 13207 ACAGAAGGATGCTTTCTGGTAAC--AGACG----GCAAATCCCA-AAAGCACGTCTCAGT 13155 Query 413 TCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG 472 |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 13154 TCGGATTGAGGTCTGCAACTCGACCTCATGAAGCTGGAATCGCTAGTAATCGCGTATCAG 13095 Query 473 C-ATGCTACGGTGAATACGTTCCCG 496 | | | |||||||||||||| || Sbjct 13094 CAACGACGCGGTGAATACGTTCTCG 13070 >seq1857 Length=1661 Score = 349 bits (386), Expect = 1e-93 Identities = 352/450 (78%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 30 TTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAAC 89 ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||| |||| Sbjct 1661 TTGACGGGGGCCCGCACAAGCGGAGGAGCATGTGGTTTAATTCGATGATACGCGAGGAAC 1602 Query 90 CTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCT-TCGGGGGA 148 |||||| ||||| | ||| |||||||||||| | | || | Sbjct 1601 CTTACCCGGGCTTGAAAGTTAGTGAATGATCTAGAGATAGATCAGTGAGCAATC-----A 1547 Query 149 CAGAGTGAC-AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGT 207 || | || ||||| ||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 1546 CAC-GAAACTAGGTGCTGCATGGCTGTCGTCAGCTCGTGCCGTGAGGTGTTGGGTTAAGT 1488 Query 208 CCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA--TTAAGTTGGGCACTCTAAGT 265 ||||||||||||||||||| || | |||||||||| || ||||| |||| ||||||| Sbjct 1487 CCCGCAACGAGCGCAACCCCTATGTTTAGTTGCCAGCACGTTAAGGTGGGGACTCTAAAC 1428 Query 266 TGACTGCCGGTGACAAACCG-GAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTA 324 ||||||| ||| ||||| | |||||||| |||||||||||||| |||||||| |||||| Sbjct 1427 AGACTGCCTGTG-CAAACAGAGAGGAAGGAGGGGACGACGTCAAGTCATCATGGCCCTTA 1369 Query 325 TGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTC 384 | |||||||||||||||||||||||| |||| |||||||| | || | | Sbjct 1368 CGTCCGGGGCTACACACGTGCTACAATGGATGGTACAGAGGGCAGCAAGCTGGCAACAGC 1309 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 |||| |||| || |||| ||| |||||||||| | |||||||||||||| |||| Sbjct 1308 AAGCGAATCTCAAAAAGCCATTCACAGTTCGGATAGAGGTCTGCAACTCGACCTCTTGAA 1249 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCA 474 | |||| ||||||||||||| ||||||| Sbjct 1248 GTTGGATTCGCTAGTAATCGCGTATCAGCA 1219 >seq1755 Length=4651 Score = 178 bits (196), Expect = 4e-42 Identities = 139/165 (84%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 332 GGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 |||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| || Sbjct 4651 GGCTACACACGTGCTACAATGGTGGTGACAGTGGGCAGCGAGACCGCGAGGTCGAGCTAA 4592 Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 || | |||| | |||||||||||||| | |||||||||||| | |||||| ||||| Sbjct 4591 TCTCCAAAAGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCATGAAGTTGGAA 4533 Query 452 TCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||||||||||||| |||||| |||| |||||||||||||||||| Sbjct 4532 TCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCG 4488 >seq5313 Length=453 Score = 111 bits (122), Expect = 5e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||| || |||||||||||||||||||| || || ||||||||||||||| Sbjct 381 TACGATCGCAAGATTAAAACTCAAAGGAATTGACGGAGATTTGCGCAAGCGGTGGAGCAT 322 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 || ||||||||||| ||| |||| || |||||||| | |||| Sbjct 321 GTAGTTTAATTCGATATAACACGAAAAATCTTACCAATTTTTGA 278 >seq6 Length=53452 Score = 107 bits (118), Expect = 6e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||| || ||||||||||||||| || Sbjct 52884 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGAGATTTGCACAAGCGGTGGAGTAT 52943 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 |||||||||||||| ||| || |||| |||||||| Sbjct 52944 GTGGTTTAATTCGATATAACACGCAGAATCTTACCAA 52980 >seq606 Length=289815 Score = 96.9 bits (106), Expect = 1e-17 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 63 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4 Query 61 GTG 63 ||| Sbjct 3 GTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503883079040