Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2 194 3e-47 seq1569 122 2e-25 seq1407 102 2e-19 >seq2 Length=124989 Score = 194 bits (214), Expect = 3e-47 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | ||| |||||||||||||||||||||||| ||| |||||||||||| Sbjct 3532 GACAGTGTTTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAAAGTAACGGAGGCTT 3473 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| |||||||||| | |||| |||| ||| | ||||||| ||| ||||||| | Sbjct 3472 TCAAAGGTACCCTCAGCACGAATGGTAACCGTGCATAGAGTGCAATAGCATAAGGGTGCT 3413 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || || |||||| |||||| |||||| || || |||||||| ||| | Sbjct 3412 TGACTGTGAGACTAACAAGTCGAGCAGGATCGAAAGATGGATATAGTGATCCGGTGGTTC 3353 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| |||| |||||| | ||||||||| ||| ||||||||| Sbjct 3352 CACATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACTCTGGGGATA 3306 >seq1569 Length=2469 Score = 122 bits (134), Expect = 2e-25 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 921 GGACATTGTTTGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 862 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||| | ||| |||| | | ||||||| ||| ||| || Sbjct 861 TTCAAAGGTAAGCTCAATACGCTTGGTAACCGTATGAGGAGTGCAATAGCATAAGCTTGC 802 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || | |||| | ||||||| |||||| ||| || |||||||| ||| Sbjct 801 TTGACTGTGAGGCAGACAAGCCGAGCAGGGTCGAAAGACGGATATAGTGATCCGGTGGTT 742 Query 292 CTGAATGGAACGGCCGTCGCTC 313 ||| |||||| |||| |||||| Sbjct 741 CTGCATGGAAGGGCCATCGCTC 720 >seq1407 Length=3311 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 ||||||||||| | | |||||||||| || || ||| |||||| |||||||| || || Sbjct 2492 AAAGGCAAAAGCGCGCTTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCT 2551 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 || |||||||| ||| ||| |||||| |||| |||||| ||||| Sbjct 2552 TAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGA 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982323628224