Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-43 seq1407 138 1e-30 seq1755 136 4e-30 seq1569 111 2e-22 seq6 82.4 8e-14 >seq2 Length=124989 Score = 179 bits (198), Expect = 4e-43 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || Sbjct 3682 GGGGTCTTTTCGTCCCGCTGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCGA 3741 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 |||| | ||||||||| || |||||||||||||||||||||||||||| Sbjct 3742 GCTCTTGATTGAGACAGTGCCCAAGTCGTTAAACCATTCGTGCAGGTCGGAACTTACCCG 3801 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 3802 ACAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACGGCCGCCGTTTACTGGGGCTTC 3860 >seq1407 Length=3311 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||| || | |||||||||| | | | ||||||||||| Sbjct 2226 CGGGGTCTTTCCGTCTAGCCGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTG 2167 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 2166 AG-TCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 2108 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 2107 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 2076 >seq1755 Length=4651 Score = 136 bits (150), Expect = 4e-30 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 1400 CGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 1459 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || || | ||||||| ||| |||||||||||||||||||||||||| Sbjct 1460 AGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1519 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1520 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 1579 >seq1569 Length=2469 Score = 111 bits (122), Expect = 2e-22 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||||| | ||||||| |||| ||||||||| || |||||||||| || Sbjct 1069 GGGGTCTTTCCGTCCCGTTGCGGGTACCCGGCGTCTTCACCGGGACCACAATTTCACCGA 1128 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTT 138 ||||| || |||||||| |||||||||||||||||||||||||| Sbjct 1129 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTT 1183 >seq6 Length=53452 Score = 82.4 bits (90), Expect = 8e-14 Identities = 90/124 (73%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 48 TAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNN 107 || || | |||||||| || | | |||||||| |||| | | | ||||||| Sbjct 8385 TATTCCGTATCTTCACGGAAATTCCAATTTCATTGAGATAATATTGGAGACAGTAGGGAG 8326 Query 108 NNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 167 |||||||||| |||| ||| || |||| ||||||||||||||||||||| ||| Sbjct 8325 GTCGTTACACCATTCATGCACGTCAAAAATTACTTGACAAGGAATTTCGCTACCTTTGGA 8266 Query 168 CCGT 171 |||| Sbjct 8265 CCGT 8262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547158790026