Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq204 343 3e-92 seq606 306 8e-81 seq54 212 1e-52 seq2442 129 1e-27 seq5871 111 3e-22 seq6 104 5e-20 >seq204 Length=6015 Score = 343 bits (380), Expect = 3e-92 Identities = 193/195 (99%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 173 TTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTC 232 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5498 TTACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTC 5439 Query 233 CCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCC 292 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5438 CCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGGACGTTATCCCCC 5379 Query 293 ACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCT 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5378 ACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCT 5319 Query 353 TCTCTCTACCGCTCG 367 ||||||||||||||| Sbjct 5318 TCTCTCTACCGCTCG 5304 Score = 78.8 bits (86), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 2/52 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGC 52 ||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 5665 CTTTACAATCCGAAGACCTTC-TTCACACACGCGGCA-TGGCTGGATCAGGC 5616 >seq606 Length=289815 Score = 306 bits (338), Expect = 8e-81 Identities = 270/336 (80%), Gaps = 16/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 496 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 553 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 554 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 613 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 614 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 673 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||| || |||||||| || || | | ||| Sbjct 674 CCAACTAGCTAATCCAACGCGGGCTCATC--------CATCTCCGATAAAT------CTT 719 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 ||||||| ||||||||| |||||||||| ||||||| |||||| || | | Sbjct 720 TCTCCCGAAGGACGTATACGGTATTAGCACACGTTTCCATGCGTTATTCCGTAGAGATGG 779 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||| | || ||||||||||||| ||||||| Sbjct 780 GTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 815 >seq54 Length=99412 Score = 212 bits (234), Expect = 1e-52 Identities = 180/218 (83%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || || | ||||| | | |||||||||| |||||| |||||||| ||||| Sbjct 14012 TTTACAACCCAGAGGGCCTTCATCCTG-CACGCGGCAT-GGCTGGTTCAGGCTTGCGCCC 14069 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 14070 ATTGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 14129 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| || |||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 14130 TGTGGGGGACTTTCCTCTCAGAACCCCTACCCATCGTCGCCTTGGTGAGCCATTACCTCA 14189 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 ||||||||||||| ||| | || ||||| || ||| Sbjct 14190 CCAACTAGCTAATGGGACGCATGCCCATCTTGTACCGC 14227 >seq2442 Length=2623 Score = 129 bits (142), Expect = 1e-27 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 80 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139 ||||||||||||||||||||||| |||||||||||| |||||||| | |||||||||| Sbjct 403 TGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGTCATCCTCTC 462 Query 140 AGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||| | || ||||||||||||||| ||| ||||| | ||||||||||||| Sbjct 463 AGATCCCCTAGTCATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 516 >seq5871 Length=500 Score = 111 bits (122), Expect = 3e-22 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||| ||| |||||||||||||||| ||||| |||| | | |||| | Sbjct 143 GCTGGATCAAGCTTGCGCTCATTGTCCAATATTCCTTACTGCAGCCT--CTTCAGAGTTT 200 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || | | | ||| | ||| |||| ||||||| ||||| |||| |||| ||| | Sbjct 201 GGTCGTTCTTTCAATACCAATGTGGATGATCATTCTCTCGAACCACCTACGAATCTCAGG 260 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCT 205 ||||| |||| ||||| |||||||| ||||| |||| || ||| Sbjct 261 TTTGGTAAGCCTTTACCCCACCAACTGCCTAATTCGACATACGCT 305 >seq6 Length=53452 Score = 104 bits (114), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 5/185 (3%) Strand=Plus/Minus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||| | |||| || || | ||||||| ||| || ||||||||||||||| |||||| Sbjct 52437 TTCCCTCACGTGGTATCG-CTGGATCTAACTTACGTTAATTGTCCAATATTCCTCACTGC 52379 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||| | | |||| ||| | | | ||| ||||| |||| |||||||| || |||| Sbjct 52378 TGCCT--CTTTCGAGTTTGGCCTTTTTTTCAATTCCAATGTGGATGATCATCTTCCCAGA 52321 Query 143 CCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC--TAATCCGACCT 200 ||| |||| ||| ||| |||| | || ||||||| | |||||| | |||| ||| | Sbjct 52320 CCACCTACGAATCTTCGGCTTGATAAGACATTACCCTATCAACTACCCTTAATTCGATAT 52261 Query 201 AGGCT 205 | ||| Sbjct 52260 AAGCT 52256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071916662720