Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq3966 405 8e-111 seq1191 113 7e-23 >seq3966 Length=6429 Score = 405 bits (448), Expect = 8e-111 Identities = 247/261 (95%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 1 CGATGCACGCCTTGACGCAGCGAGCCAGGACTTCTTCGCGCGCTTTTTTCGTCCAGGCCC 60 ||||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||||| Sbjct 638 CGATGCATGCCTTGACGCAGCGAGCCAGTACTTCCTGGCGAGCAGTTT-CGTCCAGGCCC 696 Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 697 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGGCGTTGCAGCGAGCAATCGCGGTCG 756 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 757 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACCTGCACTTCCACGTGACGTGGG 816 Query 181 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 817 TTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGGCAGCTTCCGAG 876 Query 241 CGAGTCTGCTTGGCCGCTTCG 261 |||||||||||||| |||||| Sbjct 877 CGAGTCTGCTTGGCGGCTTCG 897 >seq1191 Length=87457 Score = 113 bits (124), Expect = 7e-23 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 70 GCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGG 129 ||||||||| ||||||||||| || || |||| |||||| ||||| |||||||| || Sbjct 37234 GCTTCTTCCCAGACCTTCTGGTGGCGGCGCTGCAACGAGCAGTCGCGTTCGCCCAGATGC 37293 Query 130 ATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGG 189 | ||| | |||| ||||||| || || || ||||| | ||||| || || |||| Sbjct 37294 ACGGCCTTGCCCATGCCGTCGCCCATCACCTGAACTTCGATATGACGCGGCTTCTGCAGG 37353 Query 190 TACTTTTCCAGGTAGAC--CATCGGGTTGCCGAACCAGGCGCCCGCTTCGGAGCG 242 |||||||| | |||||| | || || ||| || ||||| ||||||||||| Sbjct 37354 TACTTTTCGATGTAGACGGCGTC--GTCGCCAAAGGCTGCGCCGGCTTCGGAGCG 37406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735944571380