Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq1918 845 0.0 seq4756 98.7 4e-18 >seq1918 Length=4945 Score = 845 bits (936), Expect = 0.0 Identities = 557/604 (92%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 1 TCGATCGCCTTTGGCACGGGAAGTGGCCTTGCTTTGGCTTTTCGAGGCGTTCGCCGAGAA 60 ||||||||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||| Sbjct 122 TCGATCGCCTT-GGCACGGGAAGTGGCCT-GCTT-GGCTTT-CGAGGCGTTTGCCGAGAA 177 Query 61 ACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCTTCTTTCTTGGCGTTGTCCGA 120 ||||| ||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||| Sbjct 178 GCGGCT-GACGAAGGATT-GCAGCTCGGAGATCTGCGCTTTCTT-CTTGGCGTTGTCCGA 234 Query 121 CAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTACTCGTCGTAGTTGCCCGGGAA 180 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 235 CAGCAACTGCTCGCGGGACTGGGTCGCCACGGTCATGTATTCGTCGTAGTTGCCCGGGAA 294 Query 181 CAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTG 240 ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 295 CAGGCGCAGCTCGCCGTAGTCCAGGTCGGCCATGTGGGTGCAGACGCTGTTCAGGAAGTG 354 Query 241 ACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGGGTCAGGATATTTTCCAGCCA 300 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 355 ACGGTCGTGAGAGATGATGATCATCAGGCTGTTACGCTGGGTCAGGATGTTTTCCAGCCA 414 Query 301 GCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATC 360 |||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||| Sbjct 415 GCGGATGGTGTTGATGTCCAGGTGGTTGGTCGGCTCGTCGAGCAGCAACACTTCCGGATC 474 Query 361 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCGCTCAT 420 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 475 GGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAGCCTGGTGACACTTCACTCAT 534 Query 421 CGGACCGAAGTGCTGCTCCA-GCGGAATACCCAGACCCAGCAGCAGCTCACCGGCACGGG 479 ||| ||| ||||||||| | || | |||||||| |||||||||| ||||||||| |||| Sbjct 535 CGGGCCGTTGTGCTGCTCGATGCCG-ATACCCAGGCCCAGCAGCAACTCACCGGCGCGGG 593 Query 480 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCCAGCTCGGCCACGGCCATGC 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 594 ATTCGGCGGTGTAGCCGTCCATCTCGGCGAAGTCGGTTTCCAGCTCGGCCACGGCCATGC 653 Query 540 CGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATCACGCTCGGCCTTGACCTTCC 599 |||| |||||| |||| |||||||||||||| || | || ||||||||||||||||||| Sbjct 654 CGTCGTCTTCGGTCATCTCCGGCAGCGAGTAGATGCGGTCGCGCTCGGCCTTGACCTTCC 713 Query 600 ACAG 603 |||| Sbjct 714 ACAG 717 >seq4756 Length=2845 Score = 98.7 bits (108), Expect = 4e-18 Identities = 156/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 199 GTCCAGGTCAGCCATGTGGGTACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGAT 258 |||||| || ||| |||| || | | | ||||||| ||||||||| | |||| Sbjct 1928 GTCCAGTTCGAGGATGCGGGTTGCCAGGTTCTGCAGGAAGGAACGGTCGTGCG---TGAT 1872 Query 259 GATCATCAGG-----CTGGAACGCTGGGTCAGGATATTTTCCAGCCAGCGGATGGTGTTG 313 || || || | |||||| | | ||| | ||| |||||| ||| | | | Sbjct 1871 GAACAGCACGGCGCCCTGGAAATCCTTG--AGGGCTTCTTCAAGCCAGGCGATTGCGCCG 1814 Query 314 ATGTCCAAGTGGTTGGTCGGTTCGTCGAGCAACAGCACTTCAGGATCGGAAAACAGCGCC 373 ||||||| ||||||||||||||||||||||| || || || || ||||||| ||| ||| Sbjct 1813 ATGTCCAGGTGGTTGGTCGGTTCGTCGAGCAGCAACAGATCCGGCTCGGAAACCAGGGCC 1754 Query 374 TGGGCCAGCAATACACGCAGCTTCCAGCCCGGGGACACTTCG 415 |||||||||| || || | |||||| ||||| |||| Sbjct 1753 TGGGCCAGCAGGACGCGGCGACGCCAGCCGCCGGACAATTCG 1712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1881449153304